LOCUS BC021288 2339 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens lysosomal-associated membrane protein 1, mRNA (cDNA
clone MGC:29494 IMAGE:5019745), complete cds.
ACCESSION BC021288
VERSION BC021288.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2339)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2339)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC021288.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: m Column: 23.
FEATURES Location/Qualifiers
source 1..2339
/db_xref="H-InvDB:HIT000039190"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29494 IMAGE:5019745"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2339
/gene="LAMP1"
/gene_synonym="CD107a"
/gene_synonym="LAMPA"
/gene_synonym="LGP120"
/db_xref="GeneID:3916"
/db_xref="HGNC:HGNC:6499"
/db_xref="MIM:153330"
CDS 57..1310
/gene="LAMP1"
/gene_synonym="CD107a"
/gene_synonym="LAMPA"
/gene_synonym="LGP120"
/codon_start=1
/product="lysosomal-associated membrane protein 1"
/protein_id="AAH21288.1"
/db_xref="GeneID:3916"
/db_xref="HGNC:HGNC:6499"
/db_xref="MIM:153330"
/translation="MAAPGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMA
NFSAAFSVNYDTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTL
NFTRNATRYSVQLMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQ
VHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPS
VDKYNVSGTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTL
ELHSEGTTVLLFQFGMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGN
SYKCNAEEHVRVTKAFSVNIFKVWVQAFKVEGGQFGSVEECLLDENSMLIPIAVGGAL
AGLVLIVLIAYLVGRKRSHAGYQTI"
BASE COUNT 523 a 619 c 641 g 556 t
ORIGIN
1 ggcccaaccg ccgcccgcgc ccccgctctc cgcaccgtac ccggccgcct cgcgccatgg
61 cggcccccgg cagcgcccgg cgacccctgc tgctgctact gctgttgctg ctgctcggcc
121 tcatgcattg tgcgtcagca gcaatgttta tggtgaaaaa tggcaacggg accgcgtgca
181 taatggccaa cttctctgct gccttctcag tgaactacga caccaagagt ggccctaaga
241 acatgacctt tgacctgcca tcagatgcca cagtggtgct caaccgcagc tcctgtggaa
301 aagagaacac ttctgacccc agtctcgtga ttgcttttgg aagaggacat acactcactc
361 tcaatttcac gagaaatgca acacgttaca gcgtccagct catgagtttt gtttataact
421 tgtcagacac acaccttttc cccaatgcga gctccaaaga aatcaagact gtggaatcta
481 taactgacat cagggcagat atagataaaa aatacagatg tgttagtggc acccaggtcc
541 acatgaacaa cgtgaccgta acgctccatg atgccaccat ccaggcgtac ctttccaaca
601 gcagcttcag caggggagag acacgctgtg aacaagacag gccttcccca accacagcgc
661 cccctgcgcc acccagcccc tcgccctcac ccgtgcccaa gagcccctct gtggacaagt
721 acaacgtgag cggcaccaac gggacctgcc tgctggccag catggggctg cagctgaacc
781 tcacctatga gaggaaggac aacacgacgg tgacaaggct tctcaacatc aaccccaaca
841 agacctcggc cagcgggagc tgcggcgccc acctggtgac tctggagctg cacagcgagg
901 gcaccaccgt cctgctcttc cagttcggga tgaatgcaag ttctagccgg tttttcctac
961 aaggaatcca gttgaataca attcttcctg acgccagaga ccctgccttt aaagctgcca
1021 acggctccct gcgagcgctg caggccacag tcggcaattc ctacaagtgc aacgcggagg
1081 agcacgtccg tgtcacgaag gcgttttcag tcaatatatt caaagtgtgg gtccaggctt
1141 tcaaggtgga aggtggccag tttggctctg tggaggagtg tctgctggac gagaacagca
1201 tgctgatccc catcgctgtg ggtggtgccc tggcggggct ggtcctcatc gtcctcatcg
1261 cctacctcgt cggcaggaag aggagtcacg caggctacca gactatctag cctggtgcac
1321 gcaggcacag cagctgcagg ggcctctgtt cctttctctg ggcttagggt cctgtcgaag
1381 gggaggcaca ctttctggca aacgtttctc aaatctgctt catccaatgt gaagttcatc
1441 ttgcagcatt tactatgcac aacagagtaa ctatcgaaat gacggtgtta attttgctaa
1501 ctgggttaaa tattttgcta actggttaaa cattaatatt taccaaagta ggattttgag
1561 ggtgggggtg ctctctctga gggggtgggg gtgccgctgt ctctgagggg tgggggtgcc
1621 gctgtctctg aggggtgggg gtgccgctct ctctgagggg gtgggggtgc cgctttctct
1681 gagggggtgg gggtgccgct ctctctgagg gggtgggggt gctgctctct ccgaggggtg
1741 gaatgccgct gtctctgagg ggtgggggtg ccgctctaaa ttggctccat atcatttgag
1801 tttagggttc tggtgtttgg tttcttcatt ctttactgca ctcagattta agccttacaa
1861 agggaaagcc tctggccgtc acacgtagga cgcatgaagg tcactcgtgg tgaggctgac
1921 atgctcacac attacaacag tagagaggga aaatcctaag acagaggaac tccagagatg
1981 agtgtctgga gcgcttcagt tcagctttaa aggccaggac gggccacacg tggctggcgg
2041 cctcgttcca gtggcggcac gtccttgggc gtctctaatg tctgcagctc aagggctggc
2101 acttttttaa atataaaaat gggtgttatt tttatttttt tttgtaaagt gatttttggt
2161 cttctgttga cattcggggt gatcctgttc tgcgctgtgt acaatgtgag atcggtgcgt
2221 tctcctgatg ttttgccgtg gcttggggat tgtacacggg accagctcac gtaatgcatt
2281 gcctgtaaca atgtaataaa aagcctcttt cttttaaaaa aaaaaaaaaa aaaaaaaaa
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