LOCUS BC021266 1239 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens sodium channel, voltage-gated, type I, beta, mRNA
(cDNA clone IMAGE:4585335), partial cds.
ACCESSION BC021266
VERSION BC021266.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1239)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1239)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC021266.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: e Column: 11.
FEATURES Location/Qualifiers
source 1..1239
/db_xref="H-InvDB:HIT000039179"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4585335"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1239
/gene="SCN1B"
/gene_synonym="GEFSP1"
/db_xref="GeneID:6324"
/db_xref="MIM:600235"
CDS <1..561
/gene="SCN1B"
/gene_synonym="GEFSP1"
/codon_start=1
/product="SCN1B protein"
/protein_id="AAH21266.2"
/db_xref="GeneID:6324"
/db_xref="MIM:600235"
/translation="GMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENE
VLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEH
NTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIYCYKKIAAATETA
AQENASEYLAITSESKENCTGVQVAE"
BASE COUNT 256 a 397 c 348 g 238 t
ORIGIN
1 gggatgacct tcaaaattct ttgcatctcc tgcaagcgcc gcagcgagac caacgctgag
61 accttcaccg agtggacctt ccgccagaag ggcactgagg agtttgtcaa gatcctgcgc
121 tatgagaatg aggtgttgca gctggaggag gatgagcgct tcgagggccg cgtggtgtgg
181 aatggcagcc ggggcaccaa agacctgcag gatctgtcta tcttcatcac caatgtcacc
241 tacaaccact cgggcgacta cgagtgccac gtctaccgcc tgctcttctt cgaaaactac
301 gagcacaaca ccagcgtcgt caagaagatc cacattgagg tagtggacaa agccaacaga
361 gacatggcat ccatcgtgtc tgagatcatg atgtatgtgc tcattgtggt gttgaccata
421 tggctcgtgg cagagatgat ttactgctac aagaagatcg ctgccgccac ggagactgct
481 gcacaggaga atgcctcgga atacctggcc atcacctctg aaagcaaaga gaactgcacg
541 ggcgtccagg tggccgaata gccctggccc tgggccccgc ctcaaggaag agccagccgt
601 aacggggact ctccaggcac cgcctgcccc cagcgtgggg gtggcccctc ctgggcccca
661 gaaagcctca gagtcctgcc gacggagcca ctggggtggg agggggcagg gggcttggct
721 cgcaccccca ctttcgcctc ctccagctcc tgccccgccg gccgcgcacc gccatgcatg
781 atgggtaaag caatactgcc gctgccccca ccctgcttct gctgcctgtt tggggagggg
841 ggcggtgagg tgggggcagc ggccccgcac ccctcctcct tgctgatttg cacacattgg
901 ccgcttcaga cacgcacttc tggggccagc ccctccccgc ctcctccctg cctggcggca
961 ggggtcgcga tgatgggctg gagcagtttg gggcaggggg ttctgggacc cactccgact
1021 ccccctcccc ggcatcattt cccctcccgc ttcctccggc tggacctggg gtcccccctc
1081 cctgtaatgc actcctgccc cggcccaacc tcgccctctc tcaccagcct tgaactgtgg
1141 ccacctagaa aggggcccat tcagcctcgt ctctttacag aagtagtttt gttcatgaaa
1201 taaagactct tggacttgaa aaaaaaaaaa aaaaaaaaa
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