LOCUS BC021193 3884 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 12 (potassium/chloride
transporters), member 4, mRNA (cDNA clone MGC:1455 IMAGE:3349710),
complete cds.
ACCESSION BC021193
VERSION BC021193.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3884)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3884)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC021193.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: d Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147633.
FEATURES Location/Qualifiers
source 1..3884
/db_xref="H-InvDB:HIT000039130"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1455 IMAGE:3349710"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3884
/gene="SLC12A4"
/gene_synonym="KCC1"
/db_xref="GeneID:6560"
/db_xref="HGNC:HGNC:10913"
/db_xref="MIM:604119"
CDS 70..3327
/gene="SLC12A4"
/gene_synonym="KCC1"
/codon_start=1
/product="solute carrier family 12 (potassium/chloride
transporters), member 4"
/protein_id="AAH21193.1"
/db_xref="GeneID:6560"
/db_xref="HGNC:HGNC:10913"
/db_xref="MIM:604119"
/translation="MPHFTVVPVDGPRRGDYDNLEGLSWVDYGERAELDDSDGHGNHR
ESSPFLSPLEASRGIDYYDRNLALFEEELDIRPKVSSLLGKLVSYTNLTQGAKEHEEA
ESGEGTRRRAAEAPSMGTLMGVYLPCLQNIFGVILFLRLTWMVGTAGVLQALLIVLIC
CCCTLLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGTTFAAAMYIL
GAIEILLTYIAPPAAIFYPSGAHDTSNATLNNMRVYGTIFLTFMTLVVFVGVKYVNKF
ASLFLACVIISILSIYAGGIKSIFDPPVFPVCMLGNRTLSRDQFDICAKTAVVDNETV
ATQLWSFFCHSPNLTTDSCDPYFMLNNVTEIPGIPGAAAGVLQENLWSAYLEKGDIVE
KHGLPSADAPSLKESLPLYVVADIATSFTVLVGIFFPSVTGIMAGSNRSGDLRDAQKS
IPVGTILAIITTSLVYFSSVVLFGACIEGVVLRDKYGDGVSRNLVVGTLAWPSPWVIV
IGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHGKVNGEPTWALLLTALIAE
LGILIASLDMVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWALSFLGMS
LCLALMFVSSWYYALVAMLIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARYALLRLEE
GPPHTKNWRPQLLVLLKLDEDLHVKYPRLLTFASQLKAGKGLTIVGSVIQGSFLESYG
EAQAAEQTIKNMMEIEKVKGFCQVVVASKVREGLAHLIQSCGLGGMRHNSVVLGWPYG
WRQSEDPRAWKTFIDTVRCTTAAHLALLVPKNIAFYPSNHERYLEGHIDVWWIVHDGG
MLMLLPFLLRQHKVWRKCRMRIFTVAQMDDNSIQMKKDLAVFLYHLRLEAEVEVVEMH
NSDISAYTYERTLMMEQRSQMLRQMRLTKTEREREAQLVKDRHSALRLESLYSDEEDE
SAVGADKIQMTWTRDKYMTETWDPSHAPDNFRELVHIKPDQSNVRRMHTAVKLNEVIV
TRSHDARLVLLNMPGPPRNSEGDENYMEFLEVLTEGLERVLLVRGGGREVITIYS"
BASE COUNT 782 a 1117 c 1165 g 820 t
ORIGIN
1 ggcggggaca gcggcgggga cagcggcggg cggctgggac ggcgggtgcg gcggggccga
61 gcccgcacga tgcctcactt caccgtggtg ccagtggacg ggccgaggcg cggcgactat
121 gacaacctcg aggggctcag ttgggtggac tacggggagc gcgccgagct ggatgactcg
181 gacggacatg gcaaccacag agagagcagc ccttttcttt cccccttgga ggcttccaga
241 ggaattgact actatgacag gaacctggca ctgtttgagg aagagctgga catccgccca
301 aaggtatcgt ctcttctggg aaagctcgtc agctacacca acctcaccca gggcgccaaa
361 gagcatgagg aggccgagag tggggagggc acccgccgga gggcagccga ggcacccagc
421 atgggcaccc tcatgggggt gtacctgccc tgcctgcaga atatctttgg ggttatcctc
481 ttcctgcggc tgacctggat ggtgggcaca gcaggtgtgc tacaggccct cctcatcgtg
541 cttatctgct gctgttgtac cctgctgacg gccatctcca tgagtgccat cgccaccaac
601 ggtgtggttc cagctggggg ctcctatttc atgatctctc gttcactggg gccagaattt
661 ggaggtgctg tgggcctgtg cttctacctg ggaacaacat tcgcagcagc catgtacatc
721 ctgggggcca tcgagatctt gctgacctac attgccccac cagctgccat tttttaccca
781 tcgggtgctc atgacacgtc gaatgccact ttgaacaata tgcgtgtgta tgggaccatt
841 ttcctgacct tcatgaccct ggtggtgttt gtgggggtca agtatgtgaa caaatttgcc
901 tcgctcttcc tggcctgtgt gatcatctcc atcctctcca tctatgctgg gggcataaag
961 tctatatttg accctcccgt gtttccggta tgcatgctgg gcaacaggac cctgtcccgg
1021 gaccagtttg acatctgtgc caagacagct gtagtggaca atgagacagt ggccacccag
1081 ctatggagtt tcttctgcca cagccccaac cttacgaccg actcctgtga cccctacttc
1141 atgctcaaca atgtgaccga gatccctggc atccccgggg cagctgctgg tgtgctccag
1201 gaaaacctgt ggagcgccta cctggagaag ggtgacatcg tggagaagca tgggctgccc
1261 tccgcagatg ccccgagcct gaaggagagc ctgcctctgt acgtggtcgc tgacatcgcc
1321 acatccttca ccgtgctggt cggcatcttc ttcccttctg taacaggcat catggctggc
1381 tcaaaccgct ctggggacct tcgtgacgcc cagaagtcta tccctgtggg gaccattctg
1441 gccatcatta caacttccct cgtgtacttc agcagtgtgg ttctctttgg tgcctgcatt
1501 gagggtgtgg ttctccggga caagtatggc gatggtgtca gcaggaactt ggtggtgggc
1561 acactggcct ggccttcacc ctgggtcatc gtcatcggct ccttcttttc aacgtgtggc
1621 gctggcctcc agagcctcac aggggcacca cgcctattgc aggccattgc caaggacaac
1681 atcatcccct tcctccgggt gtttggccac gggaaggtga atggtgaacc cacatgggca
1741 ctcctcctga cggcactcat cgccgagctg ggcatcctca tcgcctccct cgacatggtg
1801 gcccccatct tatccatgtt ctttctgatg tgctacctgt tcgtgaacct cgcctgtgcg
1861 gtgcagacac tcctgaggac ccccaactgg cggccccggt tcaagtacta tcactgggcg
1921 ctgtccttcc tgggcatgag tctctgcctg gcccttatgt ttgtctcctc ctggtactat
1981 gccctggtgg ccatgctcat cgccggcatg atctacaaat acatcgagta ccaaggggct
2041 gagaaggagt ggggtgacgg gatccgaggc ctgtccctga gcgctgcccg ctacgcgctg
2101 ttgcggctgg aggaggggcc tcctcacacc aagaactggc ggccgcagct gctggtgctg
2161 ctgaagctgg acgaggacct ccacgtgaag tacccgcggc tcctcacctt cgcctcccag
2221 ctcaaggctg gcaagggcct gaccattgtt ggttctgtca tccaggggag cttcttggag
2281 agctatggcg aggctcaggc cgccgagcag accatcaaga acatgatgga aattgagaag
2341 gtgaagggct tctgccaggt ggtggtggcc agcaaggtgc gggaggggct ggcccacctc
2401 atccagtcct gtggcctggg aggcatgcgg cataactccg tggtgctggg ctggccctac
2461 ggctggcgac agagcgagga cccccgtgcc tggaagacct tcattgacac cgtgcgctgc
2521 actacggctg cccacctggc cctgctcgtg cccaagaaca tcgccttcta ccccagcaac
2581 cacgagcgct acctggaggg ccacatagac gtgtggtgga tcgtgcacga tggtggcatg
2641 ctcatgcttc tgcccttcct gctgcgccag cataaggtct ggaggaagtg ccggatgcgc
2701 atcttcacag tggcccagat ggatgacaac agcatccaga tgaagaagga cctggctgtc
2761 tttctgtacc atctgcgcct tgaggccgag gtggaggtgg tggagatgca taacagtgac
2821 atctctgcat acacctacga gcggacgctg atgatggagc agcggtcgca gatgctgcgg
2881 cagatgagac tgaccaagac tgagcgggag cgagaagccc agctggtcaa ggatcggcac
2941 tcggccctga ggctggagag cctgtactcg gacgaggaag atgagtctgc agtgggggct
3001 gacaagatcc agatgacgtg gaccagggac aagtacatga ctgagacctg ggaccccagc
3061 catgcccctg acaatttccg ggagctggtg cacattaagc cggaccaatc caatgtgcgg
3121 cgcatgcaca ctgctgtgaa gctcaatgaa gtcattgtca cgcgctccca cgacgcccgc
3181 ctggttctcc taaacatgcc tggcccaccc aggaacagtg agggcgacga gaactacatg
3241 gagttcctcg aggtgctgac cgagggcctt gagcgggtgc tgttggtgcg cggtggtggc
3301 cgtgaagtca tcaccatcta ctcctgagcc cagtgtcatc ttgtggcctg gagtcgaggt
3361 cttggccagg acataacaag ctgtggtctg gggtaacagc ctcttcccag cacccacctg
3421 ccagccctgc ttgcctggcc ctgtcctgga cccagctttg ctaggtctcc ttggaaacca
3481 ggcctgggcc tcaaaatgga gatggatccc aggtcttgtg ggaccctggg atgtttgggg
3541 actttactat ctagcacccc agtaggcctg tcctggccag agaagactgg taggggccga
3601 gtggggtttg aaggcagccg gcccggccca gcccaggagc gctatttatt gcatatttat
3661 tgtttggatg tcaccatcag agacgaaggg aagggtagcc agggagggag tccagcccag
3721 ctgcctgcag gaagatctgg ctcagtctac tatgggcagg gccccccacc aagctgagcc
3781 gaatggagac agctgagctg aggcctgact ttttcaataa aacattgtgt agttctgggc
3841 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//