LOCUS BC021117 2851 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens colony stimulating factor 1 (macrophage), mRNA (cDNA
clone MGC:31930 IMAGE:4586312), complete cds.
ACCESSION BC021117
VERSION BC021117.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2851)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2851)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: f Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27262660.
FEATURES Location/Qualifiers
source 1..2851
/db_xref="H-InvDB:HIT000039097"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31930 IMAGE:4586312"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2851
/gene="CSF1"
/gene_synonym="MCSF"
/gene_synonym="MGC31930"
/db_xref="GeneID:1435"
/db_xref="HGNC:HGNC:2432"
/db_xref="MIM:120420"
CDS 190..1854
/gene="CSF1"
/gene_synonym="MCSF"
/gene_synonym="MGC31930"
/codon_start=1
/product="colony stimulating factor 1 (macrophage)"
/protein_id="AAH21117.1"
/db_xref="GeneID:1435"
/db_xref="HGNC:HGNC:2432"
/db_xref="MIM:120420"
/translation="MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIG
SGHLQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDN
TPNAIAIVQLQELSLRLKSCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLL
DKDWNIFSKNCNNSFAECSSQDVVTKPDCNCLYPKAIPSSDPASVSPHQPLAPSMAPV
AGLTWEDSEGTEGSSLLPGEQPLHTVDPGSAKQRPPRSTCQSFEPPETPVVKDSTIGG
SPQPRPSVGAFNPGMEDILDSAMGTNWVPEEASGEASEIPVPQGTELSPSRPGGGSMQ
TEPARPSNFLSASSPLPASAKGQQPADVTGTALPRVGPVRPTGQDWNHTPQKTDHPSA
LLRDPPEPGSPRISSLRPQGLSNPSTLSAQPQLSRSHSSGSVLPLGELEGRRSTRDRR
SPAEPEGGPASEGAARPLPRFNSVPLTDTGHERQSEGSSSPQLQESVFHLLVPSVILV
LLAVGGLLFYRWRRRSHQEPQRADSPLEQPEGSPLTQDDRQVELPV"
BASE COUNT 650 a 904 c 797 g 500 t
ORIGIN
1 gagggctggc cagtgaggct cggcccgggg aaagtgaaag tttgcctggg tcctctcggc
61 gccagagccg ctctccgcat cccaggacag cggtgcggcc ctcggccggg gcgcccactc
121 cgcagcagcc agcgagcgag cgagcgagcg agggcggccg acgcgcccgg ccgggaccca
181 gctgcccgta tgaccgcgcc gggcgccgcc gggcgctgcc ctcccacgac atggctgggc
241 tccctgctgt tgttggtctg tctcctggcg agcaggagta tcaccgagga ggtgtcggag
301 tactgtagcc acatgattgg gagtggacac ctgcagtctc tgcagcggct gattgacagt
361 cagatggaga cctcgtgcca aattacattt gagtttgtag accaggaaca gttgaaagat
421 ccagtgtgct accttaagaa ggcatttctc ctggtacaag acataatgga ggacaccatg
481 cgcttcagag ataacacccc caatgccatc gccattgtgc agctgcagga actctctttg
541 aggctgaaga gctgcttcac caaggattat gaagagcatg acaaggcctg cgtccgaact
601 ttctatgaga cacctctcca gttgctggag aaggtcaaga atgtctttaa tgaaacaaag
661 aatctccttg acaaggactg gaatattttc agcaagaact gcaacaacag ctttgctgaa
721 tgctccagcc aagatgtggt gaccaagcct gattgcaact gcctgtaccc caaagccatc
781 cctagcagtg acccggcctc tgtctcccct catcagcccc tcgccccctc catggcccct
841 gtggctggct tgacctggga ggactctgag ggaactgagg gcagctccct cttgcctggt
901 gagcagcccc tgcacacagt ggatccaggc agtgccaagc agcggccacc caggagcacc
961 tgccagagct ttgagccgcc agagacccca gttgtcaagg acagcaccat cggtggctca
1021 ccacagcctc gcccctctgt cggggccttc aaccccggga tggaggatat tcttgactct
1081 gcaatgggca ctaattgggt cccagaagaa gcctctggag aggccagtga gattcccgta
1141 ccccaaggga cagagctttc cccctccagg ccaggagggg gcagcatgca gacagagccc
1201 gccagaccca gcaacttcct ctcagcatct tctccactcc ctgcatcagc aaagggccaa
1261 cagccggcag atgtaactgg tacagccttg cccagggtgg gccccgtgag gcccactggc
1321 caggactgga atcacacccc ccagaagaca gaccatccat ctgccctgct cagagacccc
1381 ccggagccag gctctcccag gatctcatca ctgcgccccc agggcctcag caacccctcc
1441 accctctctg ctcagccaca gctttccaga agccactcct cgggcagcgt gctgcccctt
1501 ggggagctgg agggcaggag gagcaccagg gatcggagga gccccgcaga gccagaagga
1561 ggaccagcaa gtgaaggggc agccaggccc ctgccccgtt ttaactccgt tcctttgact
1621 gacacaggcc atgagaggca gtccgaggga tcctccagcc cgcagctcca ggagtctgtc
1681 ttccacctgc tggtgcccag tgtcatcctg gtcttgctgg ccgtcggagg cctcttgttc
1741 tacaggtgga ggcggcggag ccatcaagag cctcagagag cggattctcc cttggagcaa
1801 ccagagggca gccccctgac tcaggatgac agacaggtgg aactgccagt gtagagggaa
1861 ttctaagctg gacgcacaga acagtctctc cgtgggagga gacattatgg ggcgtccacc
1921 accacccctc cctggccatc ctcctggaat gtggtctgcc ctccaccaga gctcctgcct
1981 gccaggactg gaccagagca gccaggctgg ggcccctctg tctcaacccg cagacccttg
2041 actgaatgag agaggccaga ggatgctccc catgctgcca ctatttattg tgagccctgg
2101 aggctcccat gtgcttgagg aaggctggtg agcccggctc aggaccctct tccctcaggg
2161 gctgcaccct cctctcactc ccttccatgc cggaacccag gccagggacc caccggcctg
2221 tggtttgtgg gaaagcaggg tggacgctga ggagtgaaag aaccctgcac ccagagggcc
2281 tgcctggtgc caaggtatcc cagcctggac aggcatggac ctgtctccag agagaggagc
2341 ctgaagttcg tggggcggga cagcgtcggc ctgatttccc gtaaaggtgt gcagcctgag
2401 agacgggaag aggaggcctc tggacctgct ggtctgcact gacagcctga agggtctaca
2461 ccctcggctc acctaagtgc cctgtgctgg ttgccaggcg cagaggggag gccagccctg
2521 ccctcaggac ctgcctgacc tgccagtgat gccaagaggg ggatcaagca ctggcctctg
2581 cccctcctcc ttccagcacc tgccagagct tctccaggag gccaagcaga ggctcccctc
2641 atgaaggaag ccattgcact gtgaacactg tacctgcctg ctgaacagcc tgcccccgtc
2701 catccatgag ccagcatccg tccgtcctcc actctccagc ctctccccat ggcctccatg
2761 acttttttca aaaaaaaaaa aaaaaaaaaa aataaaaaaa aaaaaaaaaa aaaaaaaaaa
2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//