LOCUS BC021100 1927 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens phospholipid scramblase 1, mRNA (cDNA clone MGC:31823
IMAGE:4864775), complete cds.
ACCESSION BC021100
VERSION BC021100.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1927)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1927)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: j Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 10863876.
FEATURES Location/Qualifiers
source 1..1927
/db_xref="H-InvDB:HIT000039085"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31823 IMAGE:4864775"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1927
/gene="PLSCR1"
/gene_synonym="MMTRA1B"
/db_xref="GeneID:5359"
/db_xref="HGNC:HGNC:9092"
/db_xref="MIM:604170"
CDS 89..1045
/gene="PLSCR1"
/gene_synonym="MMTRA1B"
/codon_start=1
/product="phospholipid scramblase 1"
/protein_id="AAH21100.1"
/db_xref="GeneID:5359"
/db_xref="HGNC:HGNC:9092"
/db_xref="MIM:604170"
/translation="MDKQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQV
SYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYL
SQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPF
TLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFT
IQNEKREDVLKISGPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADN
FGIQFPLDLDVKMKAVMIGACFLIDFMFFESTGSQEQKSGVW"
BASE COUNT 619 a 354 c 336 g 618 t
ORIGIN
1 gaagaggaag ccatcgcctg gccccggctc tctggacctt gtctcgctcg ggagcggaaa
61 cagcggcagc cagagaactg ttttaatcat ggacaaacaa aactcacaga tgaatgcttc
121 tcacccggaa acaaacttgc cagttgggta tcctcctcag tatccaccga cagcattcca
181 aggacctcca ggatatagtg gctaccctgg gccccaggtc agctacccac ccccaccagc
241 cggccattca ggtcctggcc cagctggctt tcctgtccca aatcagccag tgtataatca
301 gccagtatat aatcagccag ttggagctgc aggggtacca tggatgccag cgccacagcc
361 tccattaaac tgtccacctg gattagaata tttaagtcag atagatcaga tactgattca
421 tcagcaaatt gaacttctgg aagttttaac aggttttgaa actaataaca aatatgaaat
481 taagaacagc tttggacaga gggtttactt tgcagcggaa gatactgatt gctgtacccg
541 aaattgctgt gggccatcta gaccttttac cttgaggatt attgataata tgggtcaaga
601 agtcataact ctggagagac cactaagatg tagcagctgt tgttgtccct gctgccttca
661 ggagatagaa atccaagctc ctcctggtgt accaataggt tatgttattc agacttggca
721 cccatgtcta ccaaagttta caattcaaaa tgagaaaaga gaggatgtac taaaaataag
781 tggtccatgt gttgtgtgca gctgttgtgg agatgttgat tttgagatta aatctcttga
841 tgaacagtgt gtggttggca aaatttccaa gcactggact ggaattttga gagaggcatt
901 tacagacgct gataactttg gaatccagtt ccctttagac cttgatgtta aaatgaaagc
961 tgtaatgatt ggtgcctgtt tcctcattga cttcatgttt tttgaaagca ctggcagcca
1021 ggaacaaaaa tcaggagtgt ggtagtggat tagtgaaagt ctcctcagga aatctgaagt
1081 ctgtatattg attgagacta tctaaactca tacctgtatg aattaagctg taaggcctgt
1141 agctctggtt gtatactttt gcttttcaaa ttatagttta tcttctgtat aactgattta
1201 taaaggtttt tgtacatttt ttaatactca ttgtcaattt gagaaaaagg acatatgagt
1261 ttttgcattt attaatgaaa cttcctttga aaaactgctt tgaattatga tctctgattc
1321 attgtccatt ttactaccaa atattaacta aggccttatt aatttttata taaattatat
1381 cttgtcctat taaatctagt tacaatttat ttcatgcata agagctaatg ttattttgca
1441 aatgccatat attcaaaaaa gctcaaagat aattttcttt actattatgt tcaaataata
1501 ttcaatatgc atattatctt taaaaagtta aatgtttttt taatcttcaa gaaatcatgc
1561 tacacttaac ttctcctaga agctaatcta taccataata ttttcatatt cacaagatat
1621 taaattacca attttcaaat tattgttagt aaagaacaaa atgattctct cccaaagaaa
1681 gacacatttt aaatactcct tcactctaaa actctggtat tataactttt gaaagttaat
1741 atttctacat gaaatgttta gctcttacac tctatccttc ctagaaaatg gtaattgaga
1801 ttactcagat attaattaaa tacaatatca tatatatatt cacagagtat aaacctaaat
1861 aatgatctat tagattcaaa tatttgaaat aaaaacttga tttttttgta aaaaaaaaaa
1921 aaaaaaa
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