LOCUS BC021098 2866 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein), mRNA
(cDNA clone MGC:31810 IMAGE:5087967), complete cds.
ACCESSION BC021098
VERSION BC021098.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2866)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2866)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: p Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20336306.
FEATURES Location/Qualifiers
source 1..2866
/db_xref="H-InvDB:HIT000039083"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31810 IMAGE:5087967"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_99"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..2866
/gene="BCL11A"
/gene_synonym="BCL11A-L"
/gene_synonym="BCL11A-S"
/gene_synonym="BCL11A-XL"
/gene_synonym="CTIP1"
/gene_synonym="FLJ10173"
/gene_synonym="KIAA1809"
/db_xref="GeneID:53335"
/db_xref="HGNC:HGNC:13221"
/db_xref="MIM:606557"
CDS 110..2431
/gene="BCL11A"
/gene_synonym="BCL11A-L"
/gene_synonym="BCL11A-S"
/gene_synonym="BCL11A-XL"
/gene_synonym="CTIP1"
/gene_synonym="FLJ10173"
/gene_synonym="KIAA1809"
/codon_start=1
/product="B-cell CLL/lymphoma 11A (zinc finger protein)"
/protein_id="AAH21098.1"
/db_xref="GeneID:53335"
/db_xref="HGNC:HGNC:13221"
/db_xref="MIM:606557"
/translation="MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGPLGAPEGDHD
LLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKAVDKPPSPSPIEMKKASNPVEVG
IQVTPEDDDCLSTSSRGICPKQEHIADKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQ
GICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHGLRIYLESEHGSPLTPRVGIPSGLG
AECPSQPPLHGIHIADNNPFNLLRIPGSVSREASGLAEGRFPPTPPLFSPPPRHHLDP
HRIERLGAEEMALATHHPSAFDRVLRLNPMAMEPPAMDFSRRLRELAGNTSSPPLSPG
RPSPMQRLLQPFQPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCGKTFKFQSNL
VVHRRSHTGEKPYKCNLCDHACTQASKLKRHMKTHMHKSSPMTVKSDDGLSTASSPEP
GTSDLVGSASSALKSVVAKFKSENDPNLIPENGDEEEEEDDEEEEEEEEEEEEELTES
ERVDYGFGLSLEAARHHENSSRGAVVGVGDESRALPDVMQGMVLSSMQHFSEAFHQVL
GEKHKRGHLAEAEGHRDTCDEDSVAGESDRIDDGTVNGRGCSPGESASGGLSKKLLLG
SPSSLSPFSKRIKLEKEFDLPPAAMPNTENVYSQWLAGYAASRQLKDPFLSFGDSRQS
PFASSSEHSSENGSLRFSTPPGELDGGISGRSGTGSGGSTPHISGPGPGRPSSKEGRR
SDTCSSHTPIRRSTQRAQDVWQFSDGSSRALKF"
BASE COUNT 676 a 883 c 782 g 525 t
ORIGIN
1 attttctctg gagtctcctt ctttctaacc cggctctccc gatgtgaacc gagccgtcgt
61 ccgcccgccg ccgccgccgc cgccgccgcc gcccgccccg cagcccacca tgtctcgccg
121 caagcaaggc aaaccccagc acttaagcaa acgggaattc tcgcccgagc ctcttgaagc
181 cattcttaca gatgatgaac cagaccacgg cccgttggga gctccagaag gggatcatga
241 cctcctcacc tgtgggcagt gccagatgaa cttcccattg ggggacattc ttatttttat
301 cgagcacaaa cggaaacaat gcaatggcag cctctgctta gaaaaagctg tggataagcc
361 accttcccct tcaccaatcg agatgaaaaa agcatccaat cccgtggagg ttggcatcca
421 ggtcacgcca gaggatgacg attgtttatc aacgtcatct agaggaattt gccccaaaca
481 ggaacacata gcagataaac ttctgcactg gaggggcctc tcctcccctc gttctgcaca
541 tggagctcta atccccacgc ctgggatgag tgcagaatat gccccgcagg gtatttgtaa
601 agatgagccc agcagctaca catgtacaac ttgcaaacag ccattcacca gtgcatggtt
661 tctcttgcaa cacgcacaga acactcatgg attaagaatc tacttagaaa gcgaacacgg
721 aagtcccctg accccgcggg ttggtatccc ttcaggacta ggtgcagaat gtccttccca
781 gccacctctc catgggattc atattgcaga caataacccc tttaacctgc taagaatacc
841 aggatcagta tcgagagagg cttccggcct ggcagaaggg cgctttccac ccactccccc
901 cctgtttagt ccaccaccga gacatcactt ggacccccac cgcatagagc gcctgggggc
961 ggaagagatg gccctggcca cccatcaccc gagtgccttt gacagggtgc tgcggttgaa
1021 tccaatggct atggagcctc ccgccatgga tttctctagg agacttagag agctggcagg
1081 gaacacgtct agcccaccgc tgtccccagg ccggcccagc cctatgcaaa ggttactgca
1141 accattccag ccaggtagca agccgccctt cctggcgacg ccccccctcc ctcctctgca
1201 atccgcccct cctccctccc agcccccggt caagtccaag tcatgcgagt tctgcggcaa
1261 gacgttcaaa tttcagagca acctggtggt gcaccggcgc agccacacgg gcgagaagcc
1321 ctacaagtgc aacctgtgcg accacgcgtg cacccaggcc agcaagctga agcgccacat
1381 gaagacgcac atgcacaaat cgtcccccat gacggtcaag tccgacgacg gtctctccac
1441 cgccagctcc ccggaacccg gcaccagcga cttggtgggc agcgccagca gcgcgctcaa
1501 gtccgtggtg gccaagttca agagcgagaa cgaccccaac ctgatcccgg agaacgggga
1561 cgaggaggaa gaggaggacg acgaggaaga ggaagaagag gaggaagagg aggaggagga
1621 gctgacggag agcgagaggg tggactacgg cttcgggctg agcctggagg cggcgcgcca
1681 ccacgagaac agctcgcggg gcgcggtcgt gggcgtgggc gacgagagcc gcgccctgcc
1741 cgacgtcatg cagggcatgg tgctcagctc catgcagcac ttcagcgagg ccttccacca
1801 ggtcctgggc gagaagcata agcgcggcca cctggccgag gccgagggcc acagggacac
1861 ttgcgacgaa gactcggtgg ccggcgagtc ggaccgcata gacgatggca ctgttaatgg
1921 ccgcggctgc tccccgggcg agtcggcctc ggggggcctg tccaaaaagc tgctgctggg
1981 cagccccagc tcgctgagcc ccttctctaa gcgcatcaag ctcgagaagg agttcgacct
2041 gcccccggcc gcgatgccca acacggagaa cgtgtactcg cagtggctcg ccggctacgc
2101 ggcctccagg cagctcaaag atcccttcct tagcttcgga gactccagac aatcgccttt
2161 tgcctcctcg tcggagcact cctcggagaa cgggagcttg cgcttctcca caccgcccgg
2221 ggagctggac ggagggatct cggggcgcag cggcacggga agtggaggga gcacgcccca
2281 tattagtggt ccgggcccgg gcaggcccag ctcaaaagag ggcagacgca gcgacacttg
2341 ttcttcacac acccccattc ggcgtagtac ccagagagct caagatgtgt ggcagttttc
2401 ggatggaagc tcgagagccc ttaagttctg agaaaatttg aagcccccag gggtggggtg
2461 gacgcgtgcc gcccagtcga cgtcagcgtg gtctgtcatc ctgctagttt gtgatgtttt
2521 ctgacagtag cctccaagaa gccgttgtgc gaagacagag tcctgcagag tccttccagc
2581 ctaggcctgc agcgccattt tatttatatt ttttaataaa aagtaaaaac aaaaaaacag
2641 acccacattg gaacagtgaa tcagtcccat agagagggcc cgtggaccat cgctgtcatg
2701 agtgatgccc tggcccttct gaaaccagcc aacctaatta cctgtattgt ggaaatgcgc
2761 atgagtcccc aaccccttgt ttctatacat tctatgttgt cttttaaaaa gtgtgcttaa
2821 cattgacaca ataaatgttg gagctttaaa aaaaaaaaaa aaaaaa
//