LOCUS BC020968 1662 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens chemokine (C-X-C motif) receptor 4, mRNA (cDNA clone
MGC:9199 IMAGE:3846345), complete cds.
ACCESSION BC020968
VERSION BC020968.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1662)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1662)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC020968.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: g Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56790928.
FEATURES Location/Qualifiers
source 1..1662
/db_xref="H-InvDB:HIT000039055"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9199 IMAGE:3846345"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1662
/gene="CXCR4"
/gene_synonym="CD184"
/gene_synonym="D2S201E"
/gene_synonym="FB22"
/gene_synonym="HM89"
/gene_synonym="HSY3RR"
/gene_synonym="LAP3"
/gene_synonym="LCR1"
/gene_synonym="LESTR"
/gene_synonym="NPY3R"
/gene_synonym="NPYR"
/gene_synonym="NPYRL"
/gene_synonym="NPYY3R"
/gene_synonym="WHIM"
/db_xref="GeneID:7852"
/db_xref="HGNC:HGNC:2561"
/db_xref="MIM:162643"
CDS 54..1112
/gene="CXCR4"
/gene_synonym="CD184"
/gene_synonym="D2S201E"
/gene_synonym="FB22"
/gene_synonym="HM89"
/gene_synonym="HSY3RR"
/gene_synonym="LAP3"
/gene_synonym="LCR1"
/gene_synonym="LESTR"
/gene_synonym="NPY3R"
/gene_synonym="NPYR"
/gene_synonym="NPYRL"
/gene_synonym="NPYY3R"
/gene_synonym="WHIM"
/codon_start=1
/product="chemokine (C-X-C motif) receptor 4"
/protein_id="AAH20968.1"
/db_xref="GeneID:7852"
/db_xref="HGNC:HGNC:2561"
/db_xref="MIM:162643"
/translation="MEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTI
YSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANW
YFGNFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGV
WIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSC
YCIIISKLSHSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEF
ENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSVSRGSSLKILSKGKR
GGHSSVSTESESSSFHSS"
BASE COUNT 428 a 393 c 351 g 490 t
ORIGIN
1 ccgagggcct gagtgctcca gtagccaccg catctggaga accagcggtt accatggagg
61 ggatcagtat atacacttca gataactaca ccgaggaaat gggctcaggg gactatgact
121 ccatgaagga accctgtttc cgtgaagaaa atgctaattt caataaaatc ttcctgccca
181 ccatctactc catcatcttc ttaactggca ttgtgggcaa tggattggtc atcctggtca
241 tgggttacca gaagaaactg agaagcatga cggacaagta caggctgcac ctgtcagtgg
301 ccgacctcct ctttgtcatc acgcttccct tctgggcagt tgatgccgtg gcaaactggt
361 actttgggaa cttcctatgc aaggcagtcc atgtcatcta cacagtcaac ctctacagca
421 gtgtcctcat cctggccttc atcagtctgg accgctacct ggccatcgtc cacgccacca
481 acagtcagag gccaaggaag ctgttggctg aaaaggtggt ctatgttggc gtctggatcc
541 ctgccctcct gctgactatt cccgacttca tctttgccaa cgtcagtgag gcagatgaca
601 gatatatctg tgaccgcttc taccccaatg acttgtgggt ggttgtgttc cagtttcagc
661 acatcatggt tggccttatc ctgcctggta ttgtcatcct gtcctgctat tgcattatca
721 tctccaagct gtcacactcc aagggccacc agaagcgcaa ggccctcaag accacagtca
781 tcctcatcct ggctttcttc gcctgttggc tgccttacta cattgggatc agcatcgact
841 ccttcatcct cctggaaatc atcaagcaag ggtgtgagtt tgagaacact gtgcacaagt
901 ggatttccat caccgaggcc ctagctttct tccactgttg tctgaacccc atcctctatg
961 ctttccttgg agccaaattt aaaacctctg cccagcacgc actcacctct gtgagcagag
1021 ggtccagcct caagatcctc tccaaaggaa agcgaggtgg acattcatct gtttccactg
1081 agtctgagtc ttcaagtttt cactccagct aacacagatg taaaagactt ttttttatac
1141 gataaataac ttttttttaa gttacacatt tttcagatat aaaagactga ccaatattgt
1201 acagttttta ttgcttgttg gatttttgtc ttgtgtttct ttagtttttg tgaagtttaa
1261 ttgacttatt tatataaatt ttttttgttt catattgatg tgtgtctagg caggacctgt
1321 ggccaagttc ttagttgctg tatgtctcgt ggtaggactg tagaaaaggg aactgaacat
1381 tccagagcgt gtagtgaatc acgtaaagct agaaatgatc cccagctgtt tatgcataga
1441 taatctctcc attcccgtgg aacgtttttc ctgttcttaa gacgtgattt tgctgtagaa
1501 gatggcactt ataaccaaag cccaaagtgg tatagaaatg ctggtttttc agttttcagg
1561 agtgggttga tttcagcacc tacagtgtac agtcttgtat taagttgtta ataaaagtac
1621 atgttaaact taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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