LOCUS BC020950 2648 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin associated protein 1, mRNA (cDNA clone
MGC:8710 IMAGE:3851813), complete cds.
ACCESSION BC020950
VERSION BC020950.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2648)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2648)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: n Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22212941.
FEATURES Location/Qualifiers
source 1..2648
/db_xref="H-InvDB:HIT000039039"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8710 IMAGE:3851813"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2648
/gene="UBAP1"
/gene_synonym="MGC8710"
/gene_synonym="NAG20"
/gene_synonym="UAP"
/db_xref="GeneID:51271"
/db_xref="HGNC:HGNC:12461"
/db_xref="MIM:609787"
CDS 206..1714
/gene="UBAP1"
/gene_synonym="MGC8710"
/gene_synonym="NAG20"
/gene_synonym="UAP"
/codon_start=1
/product="ubiquitin associated protein 1"
/protein_id="AAH20950.1"
/db_xref="GeneID:51271"
/db_xref="HGNC:HGNC:12461"
/db_xref="MIM:609787"
/translation="MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPD
CLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKM
SFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFE
CEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASL
ERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDS
NQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPA
LTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSE
RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMH
QCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS"
BASE COUNT 673 a 663 c 672 g 640 t
ORIGIN
1 gggaagtagg acttcaacat ggcggctgcg gcactggcgg tggctacggt gacggcctgg
61 cccggagcgg gcagagttgg aggtggtggc gttcgctctc cctaggggct gtcgggagct
121 cagcggggac cgagcctggg aggccggccg gtgccagcac ctttcggctt ctgagacggc
181 ggcagcagcg gcattcaggt tctaaatggc ttctaagaag ttgggtgcag attttcatgg
241 gactttcagt taccttgatg atgtcccatt taagacagga gacaaattca aaacaccagc
301 taaagttggt ctacctattg gcttctcctt gcctgattgt ttgcaggttg tcagagaagt
361 acagtatgac ttctctttgg aaaagaaaac cattgagtgg gctgaagaga ttaagaaaat
421 cgaagaagcc gagcgggaag cagagtgcaa aattgcggaa gcagaagcta aagtgaattc
481 taagagtggc ccagagggcg atagcaaaat gagcttctcc aagactcaca gtacagccac
541 aatgccacct cctattaacc ccatcctcgc cagcttgcag cacaacagca tcctcacacc
601 aactcgggtc agcagtagtg ccacgaaaca gaaagttctc agcccacctc acataaaggc
661 ggatttcaat cttgctgact ttgagtgtga agaagaccca tttgataatc tggagttaaa
721 aactattgat gagaaggaag agctgagaaa tattctggta ggaaccactg gacccattat
781 ggctcagtta ttggacaata acttgcccag gggaggctct gggtctgtgt tacaggatga
841 ggaggtcctg gcatccttgg aacgggcaac cctagatttc aagcctcttc ataaacccaa
901 tggctttata accttaccac agttgggcaa ctgtgaaaag atgtcactgt cttccaaagt
961 gtccctcccc cctatacctg cagtaagcaa tatcaaatcc ctgtctttcc ccaaacttga
1021 ctctgatgac agcaatcaga agacagccaa gctggcgagc actttccata gcacatcctg
1081 cctccgcaat ggcacgttcc agaattccct aaagccttcc acccaaagca gtgccagtga
1141 gctcaatggg catcacactc ttgggctttc agctttgaac ttggacagtg gcacagagat
1201 gccagccctg acatcctccc agatgccttc cctctctgtt ttgtctgtgt gcacagagga
1261 atcatcacct ccaaatactg gtcccacggt cacccctcct aatttctcag tgtcacaagt
1321 gcccaacatg cccagctgtc cccaggccta ttctgaactg cagatgctgt cccccagcga
1381 gcggcagtgt gtggagacgg tggtcaacat gggctactcg tacgagtgtg tcctcagagc
1441 catgaagaag aaaggagaga atattgagca gattctcgac tatctctttg cacatggaca
1501 gctttgtgag aagggcttcg accctctttt agtggaagag gctctggaaa tgcaccagtg
1561 ttcagaagaa aagatgatgg agtttcttca gttaatgagc aaatttaagg agatgggctt
1621 tgagctgaaa gacattaagg aagttttgct attacacaac aatgaccagg acaatgcttt
1681 ggaagacctc atggctcggg caggagccag ctgagaccag gccctgccta ggccctgccg
1741 cagaaccacc atccctggga ggccctgcag agcccacctg tggggaaaga gaaggggcag
1801 cttccggatt ttcttttggg ggttagaagg tcaggtgtgg agactgctcg ccagtctctg
1861 tgagcctagg ccctgagctg gggaggtggg gaagattcgg gcatgtgagt gcccccagaa
1921 ctgtcctggc tccttccgta ttaaacgcat ttgcattttg agaagtgtcc ttcccacttc
1981 agccctccgg agagactacc ctagtctttc tggggtgttt atgtcctcag ctgaagcctg
2041 gcctagttgc tgagaggggc tggggagatg gggcgggagg gccagactca gtgctgctgt
2101 ggagctaggt gcttccccct tcccctgaga ctggtggact gaactccagt caagttgagt
2161 tcaagtgaaa gattcttcca gggttttatt ttttcccctc ctaacaaagt ctcatagtgt
2221 taacactggt tctgcaatat ctctgaggtg caaagaatgc acttttccct atggggccca
2281 gagtttgcct tttctgccag gcagtcacca cgcttcccta ccccagcctg tttcttttgg
2341 cttggtttgg accacagtcc tctgctaccc agggttttag agcccctgct ctaggaaaca
2401 gtttaagaaa tcattggccc cttcccagca cattgaatgg gtaagcagac aggccatgat
2461 ttagttggcc agcactaact ccacctctgt tctccttgaa cagcttcccc tccagcccac
2521 tgctttagga tgacacaatg aataacacct agtcatagaa atcagtctct ctggtttgtt
2581 ttgtattatg ttgtacatca ttaaagatct aaatacaaag gaaaaaaaaa aaaaaaaaaa
2641 aaaaaaaa
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