LOCUS BC020938 2126 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synaptophysin-like 1, mRNA (cDNA clone MGC:24750
IMAGE:4282246), complete cds.
ACCESSION BC020938
VERSION BC020938.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2126)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2126)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 35 Row: m Column: 10.
FEATURES Location/Qualifiers
source 1..2126
/db_xref="H-InvDB:HIT000039034"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24750 IMAGE:4282246"
/tissue_type="Brain, primitive neuroectodermal"
/clone_lib="NIH_MGC_56"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2126
/gene="SYPL1"
/gene_synonym="H-SP1"
/db_xref="GeneID:6856"
/db_xref="HGNC:HGNC:11507"
CDS 80..805
/gene="SYPL1"
/gene_synonym="H-SP1"
/codon_start=1
/product="synaptophysin-like 1"
/protein_id="AAH20938.1"
/db_xref="GeneID:6856"
/db_xref="HGNC:HGNC:11507"
/translation="MSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQV
NCPPAVTENKTVTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVT
FAVFVFLYCIAALLLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDI
KIATGHNIIDELPPCKKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKET
SLHSPSNTSAPHSQGGIPPPTGI"
BASE COUNT 605 a 375 c 394 g 752 t
ORIGIN
1 gccaccgggc tgctctggtc tcgtcggtcc cctcctccgc cccgtcgtcc tgactctctc
61 tccctccttt cctcagagga tgtccggctt ccagatcaac ctcaacccgc tcaaggagcc
121 actcggcttc atcaaggtcc tcgagtggat tgcttctatc tttgcttttg ccacctgtgg
181 aggttttaag ggccaaacag aaattcaagt gaattgtcct cctgcagtta ctgagaataa
241 aactgttaca gctacttttg gttatccatt caggttgaat gaggcatcat ttcagccacc
301 tccaggtgta aacatatgtg atgtaaattg gaaagattac gtcctcatag gcgattactc
361 ttcttctgca caattctatg ttacctttgc agtctttgtg ttcctgtact gcattgctgc
421 ccttctgctt tatgttggct acacgagtct gtatctggat agtcgtaaac ttcctatgat
481 agactttgtt gttacacttg ttgccacttt tttgtggttg gtgagcactt cagcctgggc
541 taaagctctg acagatatta aaatagctac tggtcacaat attattgatg aacttccgcc
601 ttgtaagaag aaagcagtac tgtgttactt tggctctgtg accagtatgg gatccctaaa
661 tgtatctgtg atatttggct ttctaaatat gatactctgg ggaggaaatg cttggtttgt
721 gtacaaggag accagcctac acagtccatc aaatacatct gcccctcata gccaaggagg
781 tattccacct cctaccggaa tataattaaa gggagaaata cactgtatga agtatatgtt
841 gatactatga catgttgcca acaccttgag aagcattatt tgtttctaat aaaagtaatg
901 gctttgtcaa tatattggtg ggtttaaaac tttgctgctt ttttacataa agcctgtgcc
961 tttcctagaa agttaagatg taaatgtatt ctcacatgta aatttgaaag ttcaggggtc
1021 tattatgaaa tgatacacat ttttaaatga accataattt ttttcactaa gctgtttgcc
1081 ttccaaagtg tttacacctt aagccttaac atgtatcttc attcagaaaa cagttatatt
1141 gtcataccat agtaggaaga aaaaccttta tttggaatat acactactgt aagtttgtac
1201 agatcatata cctaccacct gtctttgctt aaagagcctt gattacataa atatgtagga
1261 aaaaacatat tgagttcaaa atttatatct aacattgttt atgttatgat ttttttttaa
1321 ttgcaaagac taggtgtata tttttttctg tttttctaaa tgacccgtgg tacttaatag
1381 gtgtactaaa attgtgttgg gagcagggat ttggaaattt ctgagagatg tgtagttaat
1441 ttagtaattc tgtttcatga gatatgatct gttatgctag tggtttaata ggcttgctat
1501 gtaagtagaa cgtggctcaa ctagatatct ttatatgtat gggcattact cttagtgata
1561 tttgtttcct gtcctttgtt gctcatgctg tttaagtgca ggctgagacc cagcctcttt
1621 gtaagtacag taaaataatc caccgttttt tacagaccct agtcaaaggg ttaaaaaaat
1681 taagattgct ttccatgttt gaaatttacc attgagagtc aatgaagttg ctattttgag
1741 tttagcattg atattgtgaa aataagtgca atttggattt catgtttctt aatattcatt
1801 cttgtttcac aaatgaatga ttaaggaatt atgcatcata aaggaaccta agtgaggtat
1861 atgatgagtg tattgtcttt gcacacacat ataggtatat tctgaataca agcttattca
1921 cattttgctt cctaatcttt ttgttgtaca gggattcagg tttcttattc ttacaacatg
1981 attgtttata tgtgaagcac atcttgctgt tgccttattt ttgatgcttt tattcatgac
2041 aagaattgtc aatataagaa tgtatatctt ttttgcaacc aatttaataa aggagttaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaa
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