LOCUS BC020838 1239 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens claudin 20, mRNA (cDNA clone MGC:23949 IMAGE:4243903),
complete cds.
ACCESSION BC020838
VERSION BC020838.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1239)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1239)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 35 Row: b Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47716518.
FEATURES Location/Qualifiers
source 1..1239
/db_xref="H-InvDB:HIT000038995"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23949 IMAGE:4243903"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_62"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1239
/gene="CLDN20"
/db_xref="GeneID:49861"
/db_xref="HGNC:HGNC:2042"
CDS 382..1041
/gene="CLDN20"
/codon_start=1
/product="claudin 20"
/protein_id="AAH20838.1"
/db_xref="GeneID:49861"
/db_xref="HGNC:HGNC:2042"
/translation="MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAI
VQLHGLWMDCTWYSTGMFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGM
KCTRLGGDRETKSHASFAGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEP
GGAIYIGFISAMLLFISGMIFCTSCIKRNPEARLDPPTQQPISNTQLENNSTHNLKDY
V"
BASE COUNT 375 a 282 c 275 g 307 t
ORIGIN
1 aaaagttcga agtgggatga tcacgggcag acctgggtgg ttgggaacag gaagcatatg
61 gcatcttgca ggctataggc accacaaaat ggaacgcagg aggacagggg cttgggagag
121 ccacttcact gtcgggtaaa acaacggagc aagatgagtg cctccggatg cttggtttcc
181 ccaccctcca gtgtctgctt gctcttcaag tacctccacc aagctaatga cagtccactt
241 taggacatca cgggcctcga ggttacaact ttcccaggct ttgttatttg gttctctact
301 gcacagaaat agatagaatt ctgacagcca tcattgttaa acatcaggat tttctaagag
361 gacagactta acagtaacat catggcctca gcaggactcc agctccttgc tttcatcctg
421 gccttatctg gggtctctgg agtgctcaca gccactctgc tgcccaactg gaaggtgaat
481 gtggatgtgg actccaacat cataacagcc attgtacagc tgcacgggct ctggatggac
541 tgtacgtggt acagcactgg gatgttcagc tgtgccctga aacactccat tctgtccctc
601 cccatccacg tgcaggctgc gagagccacc atggtcctgg cgtgtgttct gtctgctttg
661 gggatctgca cttccacagt aggaatgaaa tgtactcgct taggagggga cagagaaacc
721 aagagccatg cttcctttgc tggaggagtc tgtttcatgt ctgcaggaat ctctagttta
781 atctcgacag tgtggtacac aaaggagatc atagcaaact ttctggatct gacagttcca
841 gaaagcaaca aacatgaacc tggaggagct atctatatcg gattcatttc tgcaatgctg
901 ttgtttatct ctggcatgat tttctgcacc tcctgtataa aaaggaatcc agaagctaga
961 ctcgacccac ccacacagca gcctatctct aacacacagc tcgagaacaa ttccacacac
1021 aatctgaagg attatgtgta aataactgag taatgcatat gaaatggaac ttttgggtgc
1081 caaatgggac ttttagatta aaaaaaaatc agaattatgc ttaactttcc ctacaaagaa
1141 agtagaatgt aaaatacttt aacaactaca aagtagttta aaatgccaat aaaactatca
1201 tatacaagta aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//