LOCUS BC020662 1308 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome X open reading frame 48, mRNA (cDNA clone
MGC:22339 IMAGE:4809793), complete cds.
ACCESSION BC020662
VERSION BC020662.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1308)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1308)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: p Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254909.
FEATURES Location/Qualifiers
source 1..1308
/db_xref="H-InvDB:HIT000038880"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22339 IMAGE:4809793"
/tissue_type="Lung, mucoepidermoid carcinoma"
/clone_lib="NIH_MGC_59"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1308
/gene="CXorf48"
/gene_synonym="FLJ20527"
/gene_synonym="RP13-565O16.1"
/db_xref="GeneID:54967"
/db_xref="HGNC:HGNC:26047"
CDS 66..860
/gene="CXorf48"
/gene_synonym="FLJ20527"
/gene_synonym="RP13-565O16.1"
/codon_start=1
/product="chromosome X open reading frame 48"
/protein_id="AAH20662.1"
/db_xref="GeneID:54967"
/db_xref="HGNC:HGNC:26047"
/translation="MLRLLRLALAFYGRTADPAERQGPQQQGLPQGDTQLTTVQGVVT
SFCGDYGMIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKPHYGLRAIKVDVVPRHLY
GAGPSDSGTRVLIGCVTSINEDNIYISNSIYFSIAIVSEDFVPYKGDLLEVEYSTEPG
ISNIKATSVKPIRCIHTEEVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVN
VVMVESIQFCFIWRAISITPVHKSSSGFQDDGGLGRPKRERRSQSI"
BASE COUNT 359 a 258 c 300 g 391 t
ORIGIN
1 actgaggagg cctcgtgctt catctgccac aagcggtgcc caggccggtg gtgacaactg
61 ggacgatgct caggcttctg agacttgctt tggccttcta cgggaggacg gccgaccctg
121 cagagcgaca gggcccacag cagcagggcc tcccacaagg tgacacccag ttgacaactg
181 tgcagggagt tgtcacaagt ttctgtggtg attatggcat gattgatgag tcgatctact
241 tcagtagtga tgttgtgact ggcaacgtgc ctctaaaagt tggacaaaaa gttaatgtgg
301 ttgtggaaga agataaacca cattatggat tgagagcaat caaggtggat gttgtgcctc
361 gccatcttta tggtgctgga ccctcagact caggaaccag agttttaatt ggatgtgtta
421 cttctataaa tgaagataat atttatatta gtaacagcat ttatttttcc atagccattg
481 tttctgaaga ttttgtgcct tataagggtg acttgttaga agttgaatat tccactgagc
541 caggcatctc aaacatcaag gcaacttctg tgaagcccat ccgttgtatt catacggaag
601 aggtctgcat tactagcgta catggaagaa atggggtgat agattatact atttttttca
661 ccttggattc tgtgaaactt cctgatggat acgtacctca agtagatgat atcgtcaatg
721 tggtcatggt ggagagcatt cagttctgct ttatttggag agcgatttct atcaccccag
781 tgcataaatc cagcagcgga ttccaggatg acggaggcct gggacggccc aaaagggaac
841 gtcggagcca aagcatttaa ctgaaaaggc atcagggaca gcatgttaaa ggcatgattt
901 aaagttacaa tttgacttca gttttgagcc ccgttatgct gcctgtacaa cctgtattgt
961 tccatagcct ctttcatctt ctgtcaccca cataacttgc ggtgtttgtt gttttacttg
1021 ttccttcttc cccatgctag aatgtaaact ccacaatggc aggatgtctt ttaatctggt
1081 tttttttttt cttttttctt tctttttttt tctgttgtca ttaaagcatc accaagcact
1141 tagaagagtg cctggcagac tcaatgagca gataaaatgt tattaagttc aatgactgaa
1201 tgactgggcc agcaatgata cttacctgtg gttcattcat cactggttcc ttaggaataa
1261 aattgttgag caatgcatta aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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