LOCUS BC020640 1157 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens PPPDE peptidase domain containing 1, mRNA (cDNA clone
IMAGE:4718788), partial cds.
ACCESSION BC020640
VERSION BC020640.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1157)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1157)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: e Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38708308.
FEATURES Location/Qualifiers
source 1..1157
/db_xref="H-InvDB:HIT000090193"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4718788"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_61"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene <1..1157
/gene="PPPDE1"
/gene_synonym="CGI-146"
/gene_synonym="PNAS-4"
/db_xref="GeneID:51029"
/db_xref="HGNC:HGNC:24264"
CDS <1..368
/gene="PPPDE1"
/gene_synonym="CGI-146"
/gene_synonym="PNAS-4"
/codon_start=3
/product="PPPDE1 protein"
/protein_id="AAH20640.1"
/db_xref="GeneID:51029"
/db_xref="HGNC:HGNC:24264"
/translation="TLLSAAPGSGSAARCFRPGCRGPGCTLSARLRPPEAPAGVRAAS
GPAETERLEDEAAAAGRRMGANQLVVLNVYDMVSAAPGGPEPWPRPASSRPWGSDPGP
RRFLPGVSASSLVLGGSRG"
BASE COUNT 228 a 354 c 314 g 261 t
ORIGIN
1 agacgctcct gtcggcggcg cccgggagcg gctcggctgc ccgatgcttc cgccccggct
61 gccgcgggcc gggctgtacg cttagtgccc ggctcaggcc ccctgaagcg cccgcggggg
121 tgagagcggc ctccggcccc gcggagacgg agcggcttga ggacgaggcg gcggccgcgg
181 ggaggaggat gggggctaac cagttagtgg tgctcaacgt gtacgacatg gtgagtgcgg
241 cccctggcgg ccccgagccc tggcccaggc cggcttcctc tcgcccgtgg ggctcggacc
301 ccggccccag gcgcttcctg cctggcgtct ccgcctccag cctagttctc gggggaagcc
361 gggggtgaag gagggagtat tgttattttt taatcctcgc actcgtcgac gctccggtga
421 acccagtcag cccgagggtt ttggccaaag ctcgggtggg cttgaacctc tcccatccgc
481 tcagcttgga cccgaccccg gctctgggcc cgaccccttg gccgacgtgc agtgtccttt
541 cggcaaagct tccgttgcgt ttccaacccc acttgccggc ccccggggct gccccgggac
601 ccccgtcccg accgcctgcg ctcccagctc ctctgcttct gccgaactgt ccgtctctct
661 ccatggctac gtcttcagaa actcccaagc ccctctaagt ccagaaggtc acagctttcg
721 ggtgcctgtg ctagaatctc ttcaaaggtg aacaggagcc aacacaccct ttccttgtgt
781 gttaaaggca acctcgttaa aatatgaatg aggctaacat ttctcaagaa aatagcccag
841 ctgaattatt tagagatcct ggtggtgctc ctttcctaca ctctgaagac cactttccag
901 attgggctgc tgcggatcat ttcttttctt ccataactct gccgtatgca tgaaaataat
961 tctattgggg gtcaccagta ttaacttcct tctcatggaa gaagagtgtg atcctcagaa
1021 ggttacttaa ttatgcatag tgttcctatt gcttgctgcc ttatcagtga ttatgttcct
1081 ctgtgtactt tggagtaatc taccaccaat aaaaacgtcc tggagcaaaa aaaaaaaaaa
1141 aaaaaaaaaa aaaaaaa
//