LOCUS BC020536 1165 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA
clone MGC:21022 IMAGE:3849620), complete cds.
ACCESSION BC020536
VERSION BC020536.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1165)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1165)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: l Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13376428.
FEATURES Location/Qualifiers
source 1..1165
/db_xref="H-InvDB:HIT000038807"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21022 IMAGE:3849620"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1165
/gene="NIP30"
/gene_synonym="CDA018"
/gene_synonym="CDA10"
/gene_synonym="FLJ21799"
/db_xref="GeneID:80011"
CDS 228..992
/gene="NIP30"
/gene_synonym="CDA018"
/gene_synonym="CDA10"
/gene_synonym="FLJ21799"
/codon_start=1
/product="NEFA-interacting nuclear protein NIP30"
/protein_id="AAH20536.1"
/db_xref="GeneID:80011"
/translation="MDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEEC
PEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEK
QRREEELKELKEYRNNLKKVGISQENKKEVEKKLTVKPIETKNKFSQAKLLAGAVKHK
SSESGNSVKRLKPDPEPDDKNQEPSSCKSLGNTSLSGPSIHCPSAAVCIGILPGLGAY
SGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP"
BASE COUNT 354 a 269 c 280 g 262 t
ORIGIN
1 cggtgaggaa caggaagccc tgaagggtca aaagaaatac aaaagcaaag gctattttct
61 tttttttttt ctttctttca ttccttcctt cctctgtttc tttctttctt cctttcattt
121 ttttttcttt tttaagagcg agcggctctg cggtggcggt ttggggtggg cgccgccgag
181 gtgaggtcgt ctcgcctccc gcgcgccggt agattggttg tttcattatg gatggagggg
241 atgatggtaa ccttattatc aaaaagaggt ttgtgtctga ggcagaacta gatgaacggc
301 gcaaaaggag gcaagaagaa tgggagaaag ttcgaaaacc tgaagatcca gaagaatgtc
361 cagaggaggt ttatgaccct cgatctctat atgaaaggct acaggaacag aaggacagga
421 agcagcagga gtacgaggaa cagttcaaat tcaaaaacat ggtaagaggc ttagatgaag
481 atgagaccaa cttccttgat gaggtttctc gacagcagga actaatagaa aagcaacgaa
541 gagaagaaga actgaaagaa ctgaaggaat acagaaataa cctcaagaag gttggaattt
601 ctcaagagaa caagaaggaa gtggaaaaga aactgactgt gaagcctata gaaaccaaga
661 acaagttctc ccaggcgaag ctgttggcag gagctgtgaa gcataagagc tcagagagtg
721 gcaacagtgt gaaaagactg aaaccggacc ctgagccaga tgacaagaat caagagccct
781 catcctgcaa gtctctcgga aacacctccc tgagtggccc ctccatccac tgcccctctg
841 ctgcagtatg tatcggcatc ctcccaggcc tgggtgccta ctctgggagc agcgactccg
901 agtccagctc agacagcgaa ggcaccatca atgccaccgg aaagattgtc tcctccatct
961 tccgaaccaa caccttcctc gaggccccct agtttctccg tccctacaca gggagctcct
1021 ccccaagggt agatcggacc gttcatgctg cctataggca ttatgtccct caaaaaaaaa
1081 ctcctttgcc tgcatcctgt gtacaacatg acatttttaa ccaatccaat ctaaaaatgt
1141 gccagaatcc aaaaaaaaaa aaaaa
//