LOCUS BC020493 1940 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calreticulin, mRNA (cDNA clone MGC:10100
IMAGE:3898550), complete cds.
ACCESSION BC020493
VERSION BC020493.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1940)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1940)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: k Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1940
/db_xref="H-InvDB:HIT000038786"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10100 IMAGE:3898550"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1940
/gene="CALR"
/gene_synonym="cC1qR"
/gene_synonym="RO"
/gene_synonym="SSA"
/db_xref="GeneID:811"
/db_xref="HGNC:HGNC:1455"
/db_xref="MIM:109091"
CDS 63..1316
/gene="CALR"
/gene_synonym="cC1qR"
/gene_synonym="RO"
/gene_synonym="SSA"
/codon_start=1
/product="calreticulin"
/protein_id="AAH20493.1"
/db_xref="GeneID:811"
/db_xref="HGNC:HGNC:1455"
/db_xref="MIM:109091"
/translation="MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKS
DFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQN
IDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKD
IRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED
WDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWK
PRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITN
DEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKD
EDEEDEEDKEEDEEEDVPGQAKDEL"
BASE COUNT 509 a 499 c 521 g 411 t
ORIGIN
1 gcagagccgc tgccggaggg tcgttttaaa gggcccgcgc gttgccgccc cctcggcccg
61 ccatgctgct atccgtgccg ctgctgctcg gcctcctcgg cctggccgtc gccgagcctg
121 ccgtctactt caaggagcag tttctggacg gagacgggtg gacttcccgc tggatcgaat
181 ccaaacacaa gtcagatttt ggcaaattcg ttctcagttc cggcaagttc tacggtgacg
241 aggagaaaga taaaggtttg cagacaagcc aggatgcacg cttttatgct ctgtcggcca
301 gtttcgagcc tttcagcaac aaaggccaga cgctggtggt gcagttcacg gtgaaacatg
361 agcagaacat cgactgtggg ggcggctatg tgaagctgtt tcctaatagt ttggaccaga
421 cagacatgca cggagactca gaatacaaca tcatgtttgg tcccgacatc tgtggccctg
481 gcaccaagaa ggttcatgtc atcttcaact acaagggcaa gaacgtgctg atcaacaagg
541 acatccgttg caaggatgat gagtttacac acctgtacac actgattgtg cggccagaca
601 acacctatga ggtgaagatt gacaacagcc aggtggagtc cggctccttg gaagacgatt
661 gggacttcct gccacccaag aagataaagg atcctgatgc ttcaaaaccg gaagactggg
721 atgagcgggc caagatcgat gatcccacag actccaagcc tgaggactgg gacaagcccg
781 agcatatccc tgaccctgat gctaagaagc ccgaggactg ggatgaagag atggacggag
841 agtgggaacc cccagtgatt cagaaccctg agtacaaggg tgagtggaag ccccggcaga
901 tcgacaaccc agattacaag ggcacttgga tccacccaga aattgacaac cccgagtatt
961 ctcccgatcc cagtatctat gcctatgata actttggcgt gctgggcctg gacctctggc
1021 aggtcaagtc tggcaccatc tttgacaact tcctcatcac caacgatgag gcatacgctg
1081 aggagtttgg caacgagacg tggggcgtaa caaaggcagc agagaaacaa atgaaggaca
1141 aacaggacga ggagcagagg cttaaggagg aggaagaaga caagaaacgc aaagaggagg
1201 aggaggcaga ggacaaggag gatgatgagg acaaagatga ggatgaggag gatgaggagg
1261 acaaggagga agatgaggag gaagatgtcc ccggccaggc caaggacgag ctgtagagag
1321 gcctgcctcc agggctggac tgaggcctga gcgctcctgc cgcagagctt gccgcgccaa
1381 ataatgtctc tgtgagactc gagaactttc atttttttcc aggctggttc ggatttgggg
1441 tggattttgg ttttgttccc ctcctccact ctcccccacc ccctccccgc cctttttttt
1501 ttttttttta aactggtatt ttatctttga ttctccttca gccctcaccc ctggttctca
1561 tctttcttga tcaacatctt ttcttgcctc tgtccccttc tctcatctct tagctcccct
1621 ccaacctggg gggcagtggt gtggagaagc cacaggcctg agatttcatc tgctctcctt
1681 cctggagccc agaggagggc agcagaaggg ggtggtgtct ccaacccccc agcactgagg
1741 aagaacgggg ctcttctcat ttcacccctc cctttctccc ctgcccccag gactgggcca
1801 cttctgggtg gggcagtggg tcccagattg gctcacactg agaatgtaag aactacaaac
1861 aaaatttcta ttaaattaaa ttttgtgtct ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaccaaaaaa aaaaaaaaaa
//