LOCUS BC020217 2887 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens splicing factor 1, mRNA (cDNA clone MGC:31898
IMAGE:4869292), complete cds.
ACCESSION BC020217
VERSION BC020217.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2887)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2887)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: k Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544129.
FEATURES Location/Qualifiers
source 1..2887
/db_xref="H-InvDB:HIT000038758"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31898 IMAGE:4869292"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2887
/gene="SF1"
/gene_synonym="D11S636"
/gene_synonym="ZFM1"
/db_xref="GeneID:7536"
/db_xref="HGNC:HGNC:12950"
/db_xref="MIM:601516"
CDS 352..1998
/gene="SF1"
/gene_synonym="D11S636"
/gene_synonym="ZFM1"
/codon_start=1
/product="splicing factor 1"
/protein_id="AAH20217.1"
/db_xref="GeneID:7536"
/db_xref="HGNC:HGNC:12950"
/db_xref="MIM:601516"
/translation="MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGL
TREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTR
KKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPR
GNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKA
VEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSSETRSITNT
TVCTKCGGAGHIASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSG
PATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGG
GPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQY
LGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPP
PPPPPSSSMASSTPLPWQQRSLPAAAMARAMRVRTFRAHW"
BASE COUNT 662 a 884 c 726 g 615 t
ORIGIN
1 cacctcccag cccaccgaac tccgccgcca tttcctcgct tggcctaacg gttcggccaa
61 tcccagcgcg catcaagaag gactgaggct ccgccaatcg gaggccgccg atttcgaccc
121 ttcgcctcgg cccggcccaa tccaggcccc ggccccgccg cccccggccc gcccccgcgg
181 tgccctctct cctccctctt tgtgcgtctc gcgccgccgc cgcccgccgc gtgagaggac
241 gggctccgcg cgctccggca gcgcattcgg gtcccctccc cccgggaggc ttgcgaagga
301 gaagccgccg cagaggaaaa gcaggtgccg gtgcctgtcc ccgggggcgc catggcgacc
361 ggagcgaacg ccacgccgtt ggacttccca agtaagaagc ggaagaggag ccgctggaac
421 caagacacaa tggaacagaa gacagtgatt ccaggaatgc ctacagttat tccccctgga
481 cttactcgag aacaagaaag agcttatata gtgcaactgc agatagaaga cctgactcgt
541 aaactgcgca caggagacct gggcatcccc cctaaccctg aggacaggtc cccttcccct
601 gagcccatct acaatagcga ggggaagcgg cttaacaccc gagagttccg cacccgcaaa
661 aagctggaag aggagcggca caacctcatc acagagatgg ttgcactcaa tccggatttc
721 aagccacctg cagattacaa acctccagca acacgtgtga gtgataaagt catgattcca
781 caagatgagt acccagaaat caactttgtg gggctgctca tcgggcccag agggaacacc
841 ctgaagaaca tagagaagga gtgcaatgcc aagattatga tccgggggaa agggtctgtg
901 aaagaaggga aggttgggcg caaagatggc cagatgttgc caggagaaga tgagccactt
961 catgccctgg ttactgccaa tacaatggag aacgtcaaaa aggcagtgga acagataaga
1021 aacatcctga agcagggtat cgagactcca gaggaccaga atgatctacg gaagatgcag
1081 cttcgggagt tggctcgctt aaatgggacc cttcgggaag acgataacag gatcttaaga
1141 ccctggcaga gctcagagac ccgcagcatt accaacacca cagtgtgtac caagtgtgga
1201 ggggctggcc acattgcttc agactgtaaa ttccaaaggc ctggtgatcc tcagtcagct
1261 caggataaag cacggatgga taaagaatat ttgtccctca tggctgaact gggtgaagca
1321 cctgtcccag catctgtggg ctccacctct gggcctgcca ccacacccct ggccagcgca
1381 cctcgtcctg ctgctcccgc caacaaccca cctccaccgt ctctcatgtc taccacccag
1441 agccgcccac cctggatgaa ttctggccct tcagagagtc ggccctacca cggcatgcat
1501 ggaggtggtc ctggtgggcc cggaggtggc ccccacagct tcccacaccc attacccagc
1561 ctgacaggtg ggcatggtgg acatcccatg cagcacaacc ccaatggacc cccaccccct
1621 tggatgcagc caccaccacc accgatgaac cagggccccc accctcctgg gcaccatggc
1681 cctcctccaa tggatcagta cctgggaagt acgcctgtgg gctctggggt ctatcgcctg
1741 catcaaggaa aaggtatgat gccgccacca cctatgggca tgatgccgcc gccgccgccg
1801 cctcccagtg ggcagccccc accccctccc tctggtcctc ttcccccatg gcaacaacag
1861 cagcagcagc ctccgccacc ccctccgccc agcagcagta tggcttccag tacccccttg
1921 ccatggcagc aaagatccct ccccgcggcg gcgatggccc gagccatgag agtgaggact
1981 ttccgcgccc attggtgacc cttccaggca gacagcctca gcaacgcccc tggtggacag
2041 gatggttcgg caaagcagcc tgagttattt ttgtggacgg aatcggaaca cgctggctcc
2101 atatcgtgaa atttttatta atttttttct ttttcctttg ttacttcttt atcttttcct
2161 ttcttcagac tccgtccaag gagatgctct ccccggtctt ctgctgcaat ttagattcct
2221 ttcccttctc tccagttctc cttcccttac caaggagagg ggagcaaatg gttttgggca
2281 agggctttgg ccattcatgt caagctggtt gtgggttttt caaggtgcca tagccacccc
2341 caaatatgtt tgtttaaagc gtggggtttt ttaatctctg ccacccttgt caagggagtc
2401 ttgtaaagtt gccgagggta ggttcatctc caggtttcgg gattcccatc cgtcctggcg
2461 atcctgccag cagtgggtgg gcagcctgag ctccctcggg ctcgcctgcc agcctggagt
2521 tcttcctgtg ctccttgatc acctgagctg cctcagattc catttggtcc tctccttcct
2581 ggaaggcttc cttttatgtt ttgttttaat cccaaatgtc tgaatgtttt gcagtgtgta
2641 ggggtttgag ccccttgttc attctccttc ctttttcctc ccgcttccct ctccatgaag
2701 tgattctgtt gacaataatg tatactgcgc gttctcttca ctggtttatc tgcagaaatt
2761 tctctgggct tttttcggtg ttagattcaa cactgcgcta aagcggggat gttccattga
2821 ataaaagagc agtgtggtaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2881 aaaaaaa
//