LOCUS BC020057 3656 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12), mRNA (cDNA clone MGC:17220 IMAGE:3924411), complete cds. ACCESSION BC020057 VERSION BC020057.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3656) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3656) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: e Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19743820. FEATURES Location/Qualifiers source 1..3656 /db_xref="H-InvDB:HIT000038726" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17220 IMAGE:3924411" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3656 /gene="ITGB1" /gene_synonym="CD29" /gene_synonym="GPIIA" /gene_synonym="VLAB" /db_xref="GeneID:3688" /db_xref="HGNC:HGNC:6153" /db_xref="MIM:135630" CDS 66..2462 /gene="ITGB1" /gene_synonym="CD29" /gene_synonym="GPIIA" /gene_synonym="VLAB" /codon_start=1 /product="integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)" /protein_id="AAH20057.1" /db_xref="GeneID:3688" /db_xref="HGNC:HGNC:6153" /db_xref="MIM:135630" /translation="MNLQPIFWIGLISSVCCVFAQTDENRCLKANAKSCGECIQAGPN CGWCTNSTFLQEGMPTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKGT AEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLE NVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFS YKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVF STDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTI FAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEG VTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCPKKDSDSFKIRPLGF TEEVEVILQYICECECQSEGIPESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVN SEDMDAYCRKENSSEICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGL ICGGNGVCKCRVCECNPNYTGSACDCSLDTSTCEASNGQICNGRGICECGVCKCTDPK FQGQTCEMCQTCLGVCAEHKECVQCRAFNKGEKKDTCTQECSYFNITKVESRDKLPQP VQPDPVSHCKEKDVDDCWFYFTYSVNGNNEVMVHVVENPECPTGPDIIPIVAGVVAGI VLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENPIYKSAVTTVVNPKYEGK " BASE COUNT 1136 a 612 c 820 g 1088 t ORIGIN 1 agcgggagtc gcggaacagc aggcccgagc ccaccgcgcc gggccccgga cgccgcgcgg 61 aaaagatgaa tttacaacca attttctgga ttggactgat cagttcagtt tgctgtgtgt 121 ttgctcaaac agatgaaaat agatgtttaa aagcaaatgc caaatcatgt ggagaatgta 181 tacaagcagg gccaaattgt gggtggtgca caaattcaac atttttacag gaaggaatgc 241 ctacttctgc acgatgtgat gatttagaag ccttaaaaaa gaagggttgc cctccagatg 301 acatagaaaa tcccagaggc tccaaagata taaagaaaaa taaaaatgta accaaccgta 361 gcaaaggaac agcagagaag ctcaagccag aggatattac tcagatccaa ccacagcagt 421 tggttttgcg attaagatca ggggagccac agacatttac attaaaattc aagagagctg 481 aagactatcc cattgacctc tactacctta tggacctgtc ttactcaatg aaagacgatt 541 tggagaatgt aaaaagtctt ggaacagatc tgatgaatga aatgaggagg attacttcgg 601 acttcagaat tggatttggc tcatttgtgg aaaagactgt gatgccttac attagcacaa 661 caccagctaa gctcaggaac ccttgcacaa gtgaacagaa ctgcaccagc ccatttagct 721 acaaaaatgt gctcagtctt actaataaag gagaagtatt taatgaactt gttggaaaac 781 agcgcatatc tggaaatttg gattctccag aaggtggttt cgatgccatc atgcaagttg 841 cagtttgtgg atcactgatt ggctggagga atgttacacg gctgctggtg ttttccacag 901 atgccgggtt tcactttgct ggagatggga aacttggtgg cattgtttta ccaaatgatg 961 gacaatgtca cctggaaaat aatatgtaca caatgagcca ttattatgat tatccttcta 1021 ttgctcacct tgtccagaaa ctgagtgaaa ataatattca gacaattttt gcagttactg 1081 aagaatttca gcctgtttac aaggagctga aaaacttgat ccctaagtca gcagtaggaa 1141 cattatctgc aaattctagc aatgtaattc agttgatcat tgatgcatac aattcccttt 1201 cctcagaagt cattttggaa aacggcaaat tgtcagaagg agtaacaata agttacaaat 1261 cttactgcaa gaacggggtg aatggaacag gggaaaatgg aagaaaatgt tccaatattt 1321 ccattggaga tgaggttcaa tttgaaatta gcataacttc aaataagtgt ccaaaaaagg 1381 attctgacag ctttaaaatt aggcctctgg gctttacgga ggaagtagag gttattcttc 1441 agtacatctg tgaatgtgaa tgccaaagcg aaggcatccc tgaaagtccc aagtgtcatg 1501 aaggaaatgg gacatttgag tgtggcgcgt gcaggtgcaa tgaagggcgt gttggtagac 1561 attgtgaatg cagcacagat gaagttaaca gtgaagacat ggatgcttac tgcaggaaag 1621 aaaacagttc agaaatctgc agtaacaatg gagagtgcgt ctgcggacag tgtgtttgta 1681 ggaagaggga taatacaaat gaaatttatt ctggcaaatt ctgcgagtgt gataatttca 1741 actgtgatag atccaatggc ttaatttgtg gaggaaatgg tgtttgcaag tgtcgtgtgt 1801 gtgagtgcaa ccccaactac actggcagtg catgtgactg ttctttggat actagtactt 1861 gtgaagccag caacggacag atctgcaatg gccggggcat ctgtgagtgt ggtgtctgta 1921 agtgtacaga tccgaagttt caagggcaaa cgtgtgagat gtgtcagacc tgccttggtg 1981 tctgtgctga gcataaagaa tgtgttcagt gcagagcctt caataaagga gaaaagaaag 2041 acacatgcac acaggaatgt tcctatttta acattaccaa ggtagaaagt cgggacaaat 2101 taccccagcc ggtccaacct gatcctgtgt cccattgtaa ggagaaggat gttgacgact 2161 gttggttcta ttttacgtat tcagtgaatg ggaacaacga ggtcatggtt catgttgtgg 2221 agaatccaga gtgtcccact ggtccagaca tcattccaat tgtagctggt gtggttgctg 2281 gaattgttct tattggcctt gcattactgc tgatatggaa gcttttaatg ataattcatg 2341 acagaaggga gtttgctaaa tttgaaaagg agaaaatgaa tgccaaatgg gacacgggtg 2401 aaaatcctat ttataagagt gccgtaacaa ctgtggtcaa tccgaagtat gagggaaaat 2461 gagtactgcc cgtgcaaatc ccacaacact gaatgcaaag tagcaatttc catagtcaca 2521 gttaggtagc tttagggcaa tattgccatg gttttactca tgtgcaggtt ttgaaaatgt 2581 acaatatgta taatttttaa aatgttttat tattttgaaa ataatgttgt aattcatgcc 2641 agggactgac aaaagacttg agacaggatg gttattcttg tcagctaagg tcacattgtg 2701 cctttttgac cttttcttcc tggactattg aaatcaagct tattggatta agtgatattt 2761 ctatagcgat tgaaagggca atagttaaag taatgagcat gatgagagtt tctgttaatc 2821 atgtattaaa actgattttt agctttacaa atatgtcagt ttgcagttat gcagaatcca 2881 aagtaaatgt cctgctagct agttaaggat tgttttaaat ctgttatttt gctatttgcc 2941 tgttagacat gactgatgac atatctgaaa gacaagtatg ttgagagttg ctggtgtaaa 3001 atacgtttga aatagttgat ctacaaaggc catgggaaaa attcagagag ttaggaagga 3061 aaaaccaata gctttaaaac ctgtgtgcca ttttaagagt tacttaatgt ttggtaactt 3121 ttatgccttc actttacaaa ttcaagcctt agataaaaga accgagcaat tttctgctaa 3181 aaagtccttg atttagcact atttacatac aggccatact ttacaaagta tttgctgaat 3241 ggggaccttt tgagttgaat ttattttatt atttttattt tgtttaatgt ctggtgcttt 3301 ctatcacctc ttctaatctt ttaatgtatt tgtttgcaat tttggggtaa gacttttttt 3361 atgagtactt tttctttgaa gttttagcgg tcaatttgcc tttttaatga acatgtgaag 3421 ttatactgtg gctatgcaac agctctcacc tacgcgagtc ttactttgag ttagtgccat 3481 aacagaccac tgtatgttta cttctcacca tttgagttgc ccatcttgtt tcacactagt 3541 cacattcttg ttttaagtgc ctttagtttt aacagttcac tttttacagt gctatttact 3601 gaagttattt attaaatatg cctaaaatac ttaaatcgga aaaaaaaaaa aaaaaa //