LOCUS BC019827 1232 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 1, mRNA
(cDNA clone MGC:29935 IMAGE:4152608), complete cds.
ACCESSION BC019827
VERSION BC019827.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1232)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1232)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: a Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5453689.
FEATURES Location/Qualifiers
source 1..1232
/db_xref="H-InvDB:HIT000038689"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29935 IMAGE:4152608"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1232
/gene="DNAJB1"
/gene_synonym="Hsp40"
/db_xref="GeneID:3337"
/db_xref="HGNC:HGNC:5270"
/db_xref="MIM:604572"
CDS 25..1047
/gene="DNAJB1"
/gene_synonym="Hsp40"
/codon_start=1
/product="DnaJ (Hsp40) homolog, subfamily B, member 1"
/protein_id="AAH19827.1"
/db_xref="GeneID:3337"
/db_xref="HGNC:HGNC:5270"
/db_xref="MIM:604572"
/translation="MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEK
FKEIAEAYDVLSDPRKREIFDRYGEEGLKGSGPSGGSGGGANGTSFSYTFHGDPHAMF
AEFFGGRNPFDTFFGQRNGEEGMDIDDPFSGFPMGMGGFTNVNFGRSRSAQEPARKKQ
DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI
TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTL
DGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVL
EQVLPI"
BASE COUNT 328 a 332 c 335 g 237 t
ORIGIN
1 gtcggcgggc cgcaggaggg ggtcatgggt aaagactact accagacgtt gggcctggcc
61 cgcggcgcgt cggacgagga gatcaagcgg gcctaccgcc gccaggcgct gcgctaccac
121 ccggacaaga acaaggagcc cggcgccgag gagaagttca aggagatcgc tgaggcctac
181 gacgtgctca gcgacccgcg caagcgcgag atcttcgacc gctacgggga ggaaggccta
241 aaggggagtg gccccagtgg cggtagcggc ggtggtgcca atggtacctc tttcagctac
301 acattccatg gagaccctca tgccatgttt gctgagttct tcggtggcag aaatcccttt
361 gacacctttt ttgggcagcg gaacggggag gaaggcatgg acattgatga cccattctct
421 ggcttcccta tgggcatggg tggcttcacc aacgtgaact ttggccgctc ccgctctgcc
481 caagagcccg cccgaaagaa gcaagatccc ccagtcaccc acgaccttcg agtctccctt
541 gaagagatct acagcggctg taccaagaag atgaaaatct cccacaagcg gctaaacccc
601 gacggaaaga gcattcgaaa cgaagacaaa atattgacca tcgaagtgaa gaaggggtgg
661 aaagaaggaa ccaaaatcac tttccccaag gaaggagacc agacctccaa caacattcca
721 gctgatatcg tctttgtttt aaaggacaag ccccacaata tctttaagag agatggctct
781 gatgtcattt atcctgccag gatcagcctc cgggaggctc tgtgtggctg cacagtgaac
841 gtccccactc tggacggcag gacgataccc gtcgtattca aagatgttat caggcctggc
901 atgcggcgaa aagttcctgg agaaggcctc cccctcccca aaacacccga gaaacgtggg
961 gacctcatta ttgagtttga agtgatcttc cccgaaagga ttccccagac atcaagaacc
1021 gtacttgagc aggttcttcc aatatagcta tctgagctcc ccaaggactg accagggacc
1081 tttccagagc tcaaggattt ctggaccttt ctaccagttg tggaccatga gagggtggga
1141 gggcccaggg agggctttcg tactgctgaa tgttttccag agcatatatt acaatctttc
1201 aaagtcgcaa aaaaaaaaaa aaaaaaaaaa aa
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