LOCUS BC019825 2344 bp mRNA linear HUM 08-SEP-2006
DEFINITION Homo sapiens spondin 1, extracellular matrix protein, mRNA (cDNA
clone IMAGE:4942973), partial cds.
ACCESSION BC019825
VERSION BC019825.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2344)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2344)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: i Column: 9.
FEATURES Location/Qualifiers
source 1..2344
/db_xref="H-InvDB:HIT000089961"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4942973"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2344
/gene="SPON1"
/gene_synonym="f-spondin"
/gene_synonym="KIAA0762"
/gene_synonym="MGC10724"
/db_xref="GeneID:10418"
/db_xref="HGNC:HGNC:11252"
/db_xref="MIM:604989"
CDS <1..782
/gene="SPON1"
/gene_synonym="f-spondin"
/gene_synonym="KIAA0762"
/gene_synonym="MGC10724"
/codon_start=3
/product="SPON1 protein"
/protein_id="AAH19825.1"
/db_xref="GeneID:10418"
/db_xref="HGNC:HGNC:11252"
/db_xref="MIM:604989"
/translation="TVNEECSPSSCLMTEWGEWDECSATCGMGMKKRHRMIKMNPADG
SMCKAETSQAEKCMMPECHTIPCLLSPWSEWSDCSVTCGKGMRTRQRMLKSLAELGDC
NEDLEQVEKCMLPECPIDCELTEWSQWSECNKSCGKGHVIRTRMTQMEPQFGGAPCPE
TVQRKKCRIRKCLRNPSIQKLRWREARESRRSEQLKEESEGEQFPGCRMRPWTAWSEC
TKLCGGGIQERYMTVKKRFKSSQFTSCKDKKEIRACNVHPC"
BASE COUNT 673 a 523 c 552 g 596 t
ORIGIN
1 gcacggtcaa cgaggagtgc tctcccagca gctgcctgat gaccgagtgg ggcgagtggg
61 acgagtgcag cgccacctgc ggcatgggca tgaagaagcg gcaccgcatg atcaagatga
121 accccgcaga tggctccatg tgcaaagccg agacatcaca ggcagagaag tgcatgatgc
181 cagagtgcca caccatccca tgcttgctgt ccccatggtc cgagtggagt gactgcagcg
241 tgacctgcgg gaagggcatg cgaacccgac agcggatgct caagtctctg gcagaacttg
301 gagactgcaa tgaggatctg gagcaggtgg agaagtgcat gctccctgaa tgccccattg
361 actgtgagct caccgagtgg tcccagtggt cggaatgtaa caagtcatgt gggaaaggcc
421 acgtgattcg aacccggatg acccaaatgg agcctcagtt tggaggtgca ccctgcccag
481 agactgtgca gcgaaaaaag tgccgcatcc gaaaatgcct tcgaaatcca tccatccaaa
541 agctacgctg gagggaggcc cgagagagcc ggcggagtga gcagctgaag gaagagtctg
601 aaggggagca gttcccaggt tgtaggatgc gcccatggac ggcctggtca gaatgcacca
661 aactgtgcgg aggtggaatt caggaacgtt acatgactgt aaagaagaga ttcaaaagct
721 cccagtttac cagctgcaaa gacaagaagg agatcagagc atgcaatgtt catccttgtt
781 agcaagggta cgagttcccc agggctgcac tctagattcc agagtcacca atggctggat
841 tatttgcttg tttaagacaa tttaaattgt gtacgctagt tttcattttt gcagtgtggt
901 tcgcccagta gtcttgtgga tgccagagac atcctttctg aatacttctt gatgggtaca
961 ggctgagtgg ggcgccctca cctccagcca gcctcttcct gcagaggagt agtgtcagcc
1021 accttgtact aagctgaaac atgtccctct ggagcttcca cctggccagg gaggacggag
1081 actttgacct actccacatg gagaggcaac catgtctgga agtgactatg cctgagtccc
1141 agggtgcggc aggtaggaaa cattcacaga tgaagacagc agattcccca cattctcatc
1201 tttggcctgt tcaatgaaac cattgtttgc ccatctcttc ttagtggaac tttaggtctc
1261 ttttcaagtc tcctcagtca tcaatagttc ctggggaaaa acagagctgg tagacttgaa
1321 gaggagcatt gatgttgggt ggcttttgtt ctttcactga gaaattcgga atacatttgt
1381 ctcacccctg atattggttc ctgatgcccc cccaacaaaa ataaataaat aaattatggc
1441 tgctttattt aaatataagg tagctagttt ttacacctga gataaataat aagcttagag
1501 tgtatttttc ccttgctttt gggggttcag aggagtatgt acaattcttc tgggaagcca
1561 gccttctgaa ctttttggta ctaaatcctt attggaacca agacaaagga agcaaaattg
1621 gtctctttag agaccaattt gcctaaattt taaaatcttc ctacacacat ctagacgttc
1681 aagtttgcaa atcagttttt agcaagaaaa catttttgct atacaaacat tttgctaagt
1741 ctgcccaaag cccccccaat gcattccttc aacaaaatac aatctctgta ctttaaagtt
1801 attttagtca tgaaatttta tatgcagaga gaaaaagtta ccgagacaga aaacaaatct
1861 aagggaaagg aatattatgg gattaagctg agcaagcaat tctggtggaa agtcaaacct
1921 gtcagtgctc cacaccaggg ctgtggtcct cccagacatg cataggaatg gccacaggtt
1981 tacactgcct tcccagcaat tataagcaca ccagattcag ggagactgac caccaaggga
2041 tagtgtaaaa ggacattttc tcagttgggt ccatcagcag tttttcttcc tgcatttatt
2101 gttgaaaact attgtttcat ttcttctttt ataggcctta ttactgctta atccaaatgt
2161 gtaccattgg tgagacacat acaatgctct gaatacacta cgaatttgta ttaaacacat
2221 cagaatattt ccaaatacaa catagtatag tcctgaatat gtacttttaa cacaagagag
2281 actattcaat aaaaactcac tgggtctttc atgtctttaa gctaaaaaaa aaaaaaaaaa
2341 aaaa
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