LOCUS BC019823 1560 bp mRNA linear HUM 04-AUG-2006
DEFINITION Homo sapiens sorting nexin family member 21, mRNA (cDNA clone
MGC:29895 IMAGE:4453502), complete cds.
ACCESSION BC019823
VERSION BC019823.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1560)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1560)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: c Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23510343.
FEATURES Location/Qualifiers
source 1..1560
/db_xref="H-InvDB:HIT000038687"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29895 IMAGE:4453502"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_89"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1560
/gene="SNX21"
/gene_synonym="dJ337O18.4"
/gene_synonym="MGC29895"
/gene_synonym="PP3993"
/gene_synonym="SNX-L"
/db_xref="GeneID:90203"
/db_xref="HGNC:HGNC:16154"
CDS 63..662
/gene="SNX21"
/gene_synonym="dJ337O18.4"
/gene_synonym="MGC29895"
/gene_synonym="PP3993"
/gene_synonym="SNX-L"
/codon_start=1
/product="sorting nexin family member 21"
/protein_id="AAH19823.1"
/db_xref="GeneID:90203"
/db_xref="HGNC:HGNC:16154"
/translation="MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSE
LEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPP
DGQWGSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYVLYTLTVIGPGP
PDCQPAQISRRYSDFERLHRNLQRQFRGPMAAISFPQSH"
BASE COUNT 388 a 461 c 412 g 299 t
ORIGIN
1 ggccgacctc catgggctgc ggggggctgc acccggaccc ctggggcgcg gcgcgcccct
61 gaatgcaccg tgggacgcag gagggtgcca tggcctcccg gctcctgcac cggctgcggc
121 acgccttggc cggcgacggc cccggggagg cggcggccag tccagaggcc gagcagtttc
181 cggagagctc agagctggag gacgacgacg ccgagggcct gtcctcccga ctcagcggca
241 ccctcagctt caccagcgcc gaggacgacg aggacgacga ggacgaggac gacgaggagg
301 ctggccctga ccagctgccc ctcggggatg ggacgtcagg agaagacgca gaacggagcc
361 ccccacctga tgggcagtgg ggcagtcagc tcctggcgcg gcagctgcag gatttctgga
421 agaagtcccg gaacaccttg gcaccccagc ggctgctctt cgaagtgacc agcgctaacg
481 ttgtcaagga cccgccctcc aagtacgtgc tctacaccct caccgtgatc ggcccaggac
541 cgccagattg ccagccagcc cagatctctc gccgttactc ggactttgag cggctgcacc
601 gaaacctgca gcggcaattc cggggcccaa tggctgccat ctccttcccc cagtcccact
661 aagttgccag gctggtctca agcgcctggg ttcaagggat cctcccgcct cagcctcctg
721 agcagctggg attacaggcg cacatcacca tgcccaacct ccaagtggac ttcttgcaaa
781 gggtctggcc cagggcaggg ctgccccaca caagggtgca ctgagtgtcg tggctgctcc
841 aaatgcccct tcatgagctt attatggacc gtcattgagg ggtaactcct cccacaggaa
901 ccccagttga cagtttaaaa gcactttcac acctctcctc gcttcctcaa aaagatcaca
961 gagggaggag ctctgagaac agtctccttc aacagctcgg ccaagcagaa ctgctgtacc
1021 tctgaccact tgtgttagga aaactatcgg ctccctgtat aataaatcaa gccaggtcct
1081 ccaagtggta attcatgaaa aatatcccca ctaccaccac caaggggaag aaaggactca
1141 gaagagagga cttgaggcca tgaggtctgg cctcttccct ccccatctgg agactctttc
1201 tcccttgctg gctttgggcc caagtttgat gtttatgagg atgattgctg gtttccctta
1261 cacatagcag agctcactca gttctcacag tagccaaatg aagcagttat gtgttgtcca
1321 gttttccaga ccaggactga aatccagaga gggtcaggaa tttggcccca tgatgaagcc
1381 aaatctgaac ccatgtcctc acttcaaggt tatcaatctt ggattgtgat gctattggta
1441 cttgagaata ccccttatct gagtataaag aatccttgag ttttgtcctt ggtttatcaa
1501 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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