LOCUS BC019670 1251 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens short chain dehydrogenase/reductase family 42E, member
1, mRNA (cDNA clone MGC:25141 IMAGE:4517213), complete cds.
ACCESSION BC019670
VERSION BC019670.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1251)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1251)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: h Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21553310.
FEATURES Location/Qualifiers
source 1..1251
/db_xref="H-InvDB:HIT000038679"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:25141 IMAGE:4517213"
/tissue_type="Bladder, transitional cell papilloma"
/clone_lib="NIH_MGC_93"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1251
/gene="SDR42E1"
/gene_synonym="HSPC105"
/db_xref="GeneID:93517"
/db_xref="HGNC:HGNC:29834"
CDS 82..1233
/gene="SDR42E1"
/gene_synonym="HSPC105"
/codon_start=1
/product="SDR42E1 protein"
/protein_id="AAH19670.1"
/db_xref="GeneID:93517"
/db_xref="HGNC:HGNC:29834"
/translation="MDPKRSQKESVLITGGSGYFGFRLGCALNQNGVHVILFDISSPA
QTIPEGIKFIQGDIRHLSDVEKAFQDADVTCVFHIASYGMSGREQLNRNLIKEVNVRG
TDNILQVCQRRRVPRLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAE
QKVLEANATPLDRGDGVLRTCALRPAGIYGPGEQRHLPRIVSYIEKGLFKFVYGDPRS
LVEFVHVDNLVQAHILASEALRADKGHIASGQPYFISDGRPVNNFEFFRPLVEGLGYT
FPSTRLPLTLVYCFAFLTEMVHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKEL
GYKAQPFDLQEAVEWFKAHGHGRSSGSRDSECFVWDGLLVFLLIIAVLM"
BASE COUNT 309 a 317 c 307 g 318 t
ORIGIN
1 ggcctgggcc tctctgcctg ctgtagccgt ctgccgcgcc cttgttcctg cagctgtcca
61 gttatctttt gactgccaca tatggacccc aaaagatctc aaaaggaaag tgtcctcatt
121 acaggaggaa gtggctattt tggttttcgc ctgggctgtg ccctgaacca aaatggagtc
181 catgtgattc tgtttgacat cagcagccct gctcaaacca ttccagaagg aatcaagttt
241 atacaaggag acatccgcca cctgtctgac gtagagaaag ccttccagga tgcagacgtc
301 acttgtgtgt tccatattgc ctcttatggt atgtcagggc gggagcaact caatcgaaac
361 ctgatcaaag aagtcaacgt caggggcaca gacaacatcc tccaggtttg ccaaaggaga
421 agggtgccca ggttagttta caccagcact ttcaatgtca tctttggagg tcaagttatc
481 agaaatgggg atgaatctct gccctacctg cctcttcacc tccaccctga tcactactct
541 cggacaaagt caattgcaga gcagaaggtg ctggaggcga atgctacacc cctggacaga
601 ggcgacggtg tcttaagaac ctgcgctctg aggccagctg gcatctatgg gcctggagaa
661 caaagacacc ttcccaggat agtcagctac atcgagaagg gtctgttcaa gtttgtctac
721 ggggacccca ggagcctggt tgagtttgtc cacgtggata acttggtgca ggctcacatt
781 ctggcctcag aagccctgag agctgacaag ggccatattg cctctgggca gccctacttc
841 atctcagatg gcagacccgt gaacaacttt gagttcttcc ggcctctggt tgagggcctg
901 ggctacacat tcccgtctac ccgcctgcca ttgaccttgg tctactgctt tgcttttcta
961 acagagatgg ttcacttcat tttgggtcga ctctacaact tccagccctt cctcactcgc
1021 actgaagttt acaaaactgg tgtcacacat tattttagct tagagaaagc caagaaagag
1081 ctaggttata aggctcagcc atttgacctc caggaagcag tggaatggtt taaagcccat
1141 ggtcatggca gaagttctgg aagtcgtgac tcggagtgtt ttgtttggga tgggctattg
1201 gtcttcctcc tgattatagc agttctcatg tgaaaaaaaa aaaaaaaaaa a
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