LOCUS BC019655 1348 bp mRNA linear HUM 06-OCT-2003 DEFINITION Homo sapiens sorting nexin 22, mRNA (cDNA clone MGC:24844 IMAGE:4932954), complete cds. ACCESSION BC019655 VERSION BC019655.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1348) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1348) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 29 Row: n Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13376169. FEATURES Location/Qualifiers source 1..1348 /db_xref="H-InvDB:HIT000038677" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:24844 IMAGE:4932954" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1348 /gene="SNX22" /gene_synonym="FLJ13952" /db_xref="GeneID:79856" CDS 38..400 /gene="SNX22" /gene_synonym="FLJ13952" /codon_start=1 /product="SNX22 protein" /protein_id="AAH19655.1" /db_xref="GeneID:79856" /translation="MLEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRY SEFHALHKRIKKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELL EFLRLRHFPTDPKASNWG" misc_feature 80..352 /gene="SNX22" /gene_synonym="FLJ13952" /note="PX; Region: PX domain. PX domains bind to phosphoinositides" /db_xref="CDD:pfam00787" BASE COUNT 338 a 356 c 409 g 245 t ORIGIN 1 gagccgagcg cgcggagcag ctggggccgg ggcgcggatg ctggaagttc acatcccgtc 61 ggtggggccc gaggccgagg ggcccaggca gagcccggag aaaagccaca tggtgttccg 121 agtggaggtg ctgtgcagcg ggcgcagaca cacggtgcca aggcgctaca gcgagttcca 181 cgcgctgcac aagcggatca agaagctgta caaagtgccc gacttcccct cgaaacgcct 241 gcccaactgg aggaccagag ggttggaaca gcgccggcag ggcttggagg cttacatcca 301 gggcatcctg tacctgaacc aggaggtgcc caaggagtta ctggaattcc tgagacttcg 361 gcacttcccc acagacccca aggctagcaa ctgggggtaa ggggggccga tggcgggggc 421 caggggctgt cagcagtgag cagcaccctg agggagttcc tgcctggcga cagcagctcc 481 cagcagcacc agcggcctgt cctgagcttc catgtggatc cctatgtttg caacccctcc 541 ccagagtcgc tgcccaacgt ggtggtgaat ggtgtgctcc agggcctcta cagcttcagc 601 atcagcccag ataaagccca gccaaaggcg gcctgtcacc ctgctcctct gccaccgatg 661 ccctgatcag tccagaggcc tttggctgcc tcctaagaaa gtcatgtgcc tctgtcctat 721 gaactccata taaggctggg tcctcctttg gcctggaccc aggacttaat tacccagtgc 781 ccagttgtgc cacattccca ctcaaggctc agaacttggc tcgcattggt agctggaggt 841 ggtagaattt gtatgctctt agagcccaac agccaaggca gggtcaagaa gataagtaat 901 aaaagaggaa gtcagctggg tgcagaggct catgcctgta atcccaatac tttaggaggc 961 caaggcagga ggatgcttgg gtctggaagt ttgagaccag ccagcgcaac atagtgagac 1021 ctgtctctac caaaaaaaaa aaaaaaatca atttagaggt aggctatgaa aaagtacaga 1081 tacatccctt aacatagact ggagggtggt ggcaagggga gcaaatgtgg aggcccagta 1141 gctggcaaag tttagaagca gggggcaaaa gctcctgcct gacttttcct gggtagctcc 1201 tgggtcaaaa tttcaggcag gatcccaggg aaggggcagg cacccattgc cacaggagag 1261 ttgcaggcat gttgggatgt aggcctaggg gaggtgctgc aggctcaaga accaggccca 1321 cacattatat attaaaaaaa aaaaaaaa //