LOCUS BC019330 1966 bp mRNA linear HUM 27-JUL-2004
DEFINITION Homo sapiens podocalyxin-like 2, mRNA (cDNA clone MGC:851
IMAGE:3502164), complete cds.
ACCESSION BC019330
VERSION BC019330.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1966)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1966)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: n Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657464.
FEATURES Location/Qualifiers
source 1..1966
/db_xref="H-InvDB:HIT000038643"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:851 IMAGE:3502164"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1966
/gene="PODXL2"
/gene_synonym="PODLX2"
/db_xref="GeneID:50512"
CDS 37..1626
/gene="PODXL2"
/gene_synonym="PODLX2"
/codon_start=1
/product="PODXL2 protein"
/protein_id="AAH19330.1"
/db_xref="GeneID:50512"
/translation="MGRLLRAARLPPLLSPLLLLLVGGAFLGACVAGSDEPGPEGLTS
TSLLDLLLPTGLEPLDSEEPSETMGLGAGLGAPGSGFPSEENEESRILQPPQYFWEEE
EELNDSSLDLGPTADYVFPDLTEKAGSIEDTSQAQELPNLPSPLPKMNLVEPPWHMPP
REEEEEEEEEEEREKEEVEKQEEEEEEELLPVNGSQEEAKPQVRDFSLTSSSQTPGAT
KSRHEDSGDQASSGVEVESSMGPSLLLPSVTPTTVTPGDQDSTSQEAEATVLPAAGLG
VEFEAPQEASEEATAGAAGLSGQHEEVPALPSFPQTTAPSGAEHPDEDPLGSRTSASS
PQLLALVEEVLPRHGSGHHGAWHISLSKPSEKEQHLLMTLVGEQGVVPTQDVLSMLGD
IRRSLEEIGIQNYSTTSSCQARASQVRSDYGTLFVVLVVIGAICIIIIALGLLYNCWQ
RRLPKLKHVSHGEELRFVENGCHDNPTLDVASDSQSEMQEKHPSLNGGGALNGPGSWG
ALMGGKRDPEDSDVFEEDTHL"
BASE COUNT 398 a 637 c 635 g 296 t
ORIGIN
1 cgcgccgctg cggctgcagg cggcgacggc tacaccatgg gccggctgct gcgggccgcc
61 cggctgccgc cgctgctttc gccgctgctg cttctgctgg ttgggggagc gttcctgggt
121 gcctgtgtgg ctgggtctga tgagcctggc ccagagggcc tcacctccac ctccctgcta
181 gacctcctgc tgcccactgg cttggagcca ctggactcag aggagcctag tgagaccatg
241 ggcctgggag ctgggctggg agcccctggc tcaggcttcc ccagcgaaga gaatgaagag
301 tctcggattc tgcagccacc acagtacttc tgggaagagg aggaagagct gaatgactca
361 agtctggacc tgggacccac tgcagattat gtttttcctg acttaactga gaaggcaggt
421 tccattgaag acaccagcca ggctcaagag ctgccaaacc tcccctctcc cttgcccaag
481 atgaatctgg ttgagcctcc ctggcatatg cctcccagag aggaggaaga agaggaagag
541 gaagaggagg agagggagaa ggaagaggta gagaaacaag aggaggagga agaggaggag
601 ctgctccctg tgaatggatc ccaagaagaa gccaagcctc aggtccgtga cttttctctc
661 accagcagca gccagacccc aggggccacc aaaagcaggc atgaagactc cggggaccag
721 gcctcatcag gtgtggaggt ggagagcagc atggggccca gcttgctgct gccttcagtc
781 accccaacta cagtgactcc gggggaccag gactccacca gccaagaggc agaggccaca
841 gtgctgccag ctgcagggct tggggtagag ttcgaggctc ctcaggaagc aagcgaggaa
901 gccactgcag gagcagctgg tttgtctggc cagcacgagg aggtgccggc cttgccttca
961 ttccctcaaa ccacagctcc cagtggggcc gagcacccag atgaagatcc ccttggctct
1021 agaacctcag cctcttcccc acagctcctg gccctggtgg aagaggtgct gccccgccat
1081 ggcagtggcc accatggggc ctggcacatc tctctgagca agcccagcga gaaggagcag
1141 caccttctca tgacactggt gggcgagcag ggggtggtgc ccactcaaga tgtcctttcc
1201 atgctgggtg acatccgcag gagcctggag gagattggca tccagaacta ttccacaacc
1261 agcagctgcc aggcgcgggc cagccaggtg cgcagcgact acggcacgct cttcgtggtg
1321 ctggtggtca ttggggccat ctgcatcatc atcattgcgc ttggcctgct ctacaactgc
1381 tggcagcgcc ggctgcccaa gctcaagcac gtgtcgcacg gcgaggagct gcgcttcgtg
1441 gagaacggct gccacgacaa ccccacgctg gacgtggcca gcgacagcca gtcggagatg
1501 caggagaagc accccagcct gaacggcggc ggggccctca acggcccggg gagctggggg
1561 gcgctcatgg ggggcaagcg ggaccccgag gactcggacg tgttcgagga ggacacgcac
1621 ctgtgagcgc agccgaggcg caggccgagt gggccgccag gaccaagcga ggtggacccc
1681 gaaacggacg gcccggagcc cgcaccagcc ccgcgcctac ccgggccgcc cccgcggcct
1741 ggccctcggc gcgggctcct tcccgcttcc cccgacttca cacggcggct tcggaccaac
1801 tccctcactc ccgcccgagg ggcaggcctc aaagcccgcc ttggccccgc tttcccgccc
1861 ctgaaccccg gccccgcggg cggcgggcgg cgcttcctgc gccccgggac tcaattaaac
1921 ccgcccggag accacgccgg gcccagcgaa aaaaaaaaaa aaaaaa
//