LOCUS BC019314 1337 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tetraspanin 4, mRNA (cDNA clone MGC:4337
IMAGE:2821236), complete cds.
ACCESSION BC019314
VERSION BC019314.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1337)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1337)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC019314.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: j Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68799924.
FEATURES Location/Qualifiers
source 1..1337
/db_xref="H-InvDB:HIT000038632"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4337 IMAGE:2821236"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1337
/gene="TSPAN4"
/gene_synonym="NAG-2"
/gene_synonym="NAG2"
/gene_synonym="TETRASPAN"
/gene_synonym="TSPAN-4"
/db_xref="GeneID:7106"
/db_xref="HGNC:HGNC:11859"
/db_xref="MIM:602644"
CDS 121..837
/gene="TSPAN4"
/gene_synonym="NAG-2"
/gene_synonym="NAG2"
/gene_synonym="TETRASPAN"
/gene_synonym="TSPAN-4"
/codon_start=1
/product="tetraspanin 4"
/protein_id="AAH19314.1"
/db_xref="GeneID:7106"
/db_xref="HGNC:HGNC:11859"
/db_xref="MIM:602644"
/translation="MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATL
SSSFPSLSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAI
LFFAYTDKIDRYAQQDLKKGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVY
NATRVPDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQIL
GLTFAMTMYCQVVKADTYCA"
BASE COUNT 231 a 432 c 405 g 269 t
ORIGIN
1 cagagcttgg ggcttccttg gtcgcaccca ccacctgcct gcccactggt cagccttcag
61 ggaccctgag caccgcctgg tctctttcct gtggccagcc cagaactgaa gcgctgcggc
121 atggcgcgcg cctgcctcca ggccgtcaag tacctcatgt tcgccttcaa cctgctcttc
181 tggctgggag gctgtggcgt gctgggtgtc ggcatctggc tggccgccac acaggggagc
241 ttcgccacgc tgtcctcttc cttcccgtcc ctgtcggctg ccaacctgct catcatcacc
301 ggcgcctttg tcatggccat cggcttcgtg ggctgcctgg gtgccatcaa ggagaacaag
361 tgcctcctgc tcactttctt cctgctgctg ctgctggtgt tcctgctgga ggccaccatc
421 gccatcctct tcttcgccta cacggacaag attgacaggt atgcccagca agacctgaag
481 aaaggcttgc acctgtacgg cacgcagggc aacgtgggcc tcaccaacgc ctggagcatc
541 atccagaccg acttccgctg ctgtggcgtc tccaactaca ctgactggtt cgaggtgtac
601 aacgccacgc gggtacctga ctcctgctgc ttggagttca gtgagagctg tgggctgcac
661 gcccccggca cctggtggaa ggcgccgtgc tacgagacgg tgaaggtgtg gcttcaggag
721 aacctgctgg ctgtgggcat ctttgggctg tgcacggcgc tggtgcagat cctgggcctg
781 accttcgcca tgaccatgta ctgccaagtg gtcaaggcag acacctactg cgcgtaggcc
841 gcccaccgcc cgcttctctg ccaaaaggac gcccacgggg agatggccgc acccacagct
901 gcctttccca ccaccagcct cggtgctctg ccccatgctg ggaggaggga gggagggaca
961 ggtgcctgga gcccccggaa ccctgtttct ggaaggccct agctcaggtg gcttcagggc
1021 ctccggaccc cccctgggag gggtggccac gtgctggctg cggaacccag ggcaggggtg
1081 ggaggggcct ccagcacttt ttatatttac gtattctcca aagcagtgtt cacacgggag
1141 ccagcctgtg gcccccagcc tcctggaaaa caggttggcg ctggaggagc cgggtcttgg
1201 catcctggag gtggccccac tggtcctggt gctccaggcg gggccgtgga cccctcacct
1261 acattccata gtgggcccgt ggggctcctg gtgcatctta ataaagtgtg agcagcaaaa
1321 aaaaaaaaaa aaaaaaa
//