LOCUS BC019299 4739 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily C, 3, mRNA (cDNA clone
MGC:4113 IMAGE:2905509), complete cds.
ACCESSION BC019299
VERSION BC019299.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4739)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4739)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: m Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14277674.
FEATURES Location/Qualifiers
source 1..4739
/db_xref="H-InvDB:HIT000038619"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4113 IMAGE:2905509"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4739
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
CDS 115..2919
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/codon_start=1
/product="protocadherin gamma subfamily C, 3"
/protein_id="AAH19299.1"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
/translation="MVPEAWRSGLVSTGRVVGVLLLLGALNKASTVIHYEIPEEREKG
FAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVNRETGEMFVNDRLDREELCGTLP
SCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEMKLEISEAVAPGTRFPLESAH
DPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPSLQLVLTALD
GGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLDEGPN
GEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANPEGA
HCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVP
PGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDI
NDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGR
YFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDRNDNAPQ
VLYPRPGGSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQSLFAIGLH
TGQISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSA
PREQKKNLTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTPGP
SLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTLRSCDPVFYR
QVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA
SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
GKAPAGGNGNKKKSGKKEKK"
BASE COUNT 1058 a 1404 c 1264 g 1013 t
ORIGIN
1 agaaagccat gtcggactcg gcgcccagcg cccaagcgct aacccgctga aagtttctca
61 gcgaaatctc agggacgatc tggaccccgc tgagaggaac tgcttttgag tgagatggtc
121 ccagaggcct ggaggagcgg actggtaagc accgggaggg tagtgggagt tttgcttctg
181 cttggtgcct tgaacaaggc ttccacggtc attcactatg agatcccgga ggaaagagag
241 aagggtttcg ctgtgggcaa cgtggtcgcg aaccttggtt tggatctcgg tagcctctca
301 gcccgcaggt tccgggtggt gtctggagct agccgaagat tctttgaggt gaaccgggag
361 accggagaga tgtttgtgaa cgaccgtctg gatcgagagg agctgtgtgg gacactgccc
421 tcttgcactg taactctgga gttggtagtg gagaacccgc tggagctgtt cagcgtggaa
481 gtggtgatcc aggacatcaa cgacaacaat cctgctttcc ctacccagga aatgaaattg
541 gagattagcg aggccgtggc tccggggacg cgctttccgc tcgagagcgc gcacgatccc
601 gatgtgggaa gcaactcttt acaaacctat gagctgagcc gaaatgaata ctttgcgctt
661 cgcgtgcaga cgcgggagga cagcaccaag tacgcggagc tggtgttgga gcgcgccctg
721 gaccgagaac gggagcctag tctccagtta gtgctgacgg cgttggacgg agggacccca
781 gctctctccg ccagcctgcc tattcacatc aaggtgctgg acgcgaatga caatgcgcct
841 gtcttcaacc agtccttgta ccgggcgcgc gtcctggagg atgcaccctc cggcacgcgc
901 gtggtacaag tccttgcaac ggatctggat gaaggcccca acggtgaaat tatttactcc
961 ttcggcagcc acaaccgcgc cggcgtgcgg caactattcg ccttagacct tgtaaccggg
1021 atgctgacaa tcaagggtcg gctggacttc gaggacacca aactccatga gatttacatc
1081 caggccaaag acaagggcgc caatcccgaa ggagcacatt gcaaagtgtt ggtggaggtt
1141 gtggatgtga atgacaacgc cccggagatc acagtcacct ccgtgtacag cccagtaccc
1201 gaggatgccc ctctggggac tgtcatcgct ttgctcagtg tgactgacct ggatgctggc
1261 gagaacgggc tggtgacctg cgaagttcca ccgggtctcc ctttcagcct tacttcttcc
1321 ctcaagaatt acttcacttt gaaaaccagt gcagacctgg atcgggagac tgtgccagaa
1381 tacaacctca gcatcaccgc ccgagacgcc ggaacccctt ccctctcagc ccttacaata
1441 gtgcgtgttc aagtgtccga catcaatgac aaccctccac aatcttctca atcttcctac
1501 gacgtttaca ttgaagaaaa caacctcccc ggggctccaa tactaaacct aagtgtctgg
1561 gaccccgacg ccccgcagaa tgctcggctt tctttctttc tcttggagca aggagctgaa
1621 accgggctag tgggtcgcta tttcacaata aatcgtgaca atggcatagt gtcatcctta
1681 gtgcccctag actatgagga tcggcgggaa tttgaattaa cagctcatat cagcgatggg
1741 ggcaccccgg tcctagccac caacatcagc gtgaacatat ttgtcactga tcgcaatgac
1801 aatgcccccc aggtcctata tcctcggcca ggtgggagct cggtggagat gctgcctcga
1861 ggtacctcag ctggccacct agtgtcacgg gtggtaggct gggacgcgga tgcagggcac
1921 aatgcctggc tctcctacag tctcttggga tcccctaacc agagcctttt tgccataggg
1981 ctgcacactg gtcaaatcag tactgcccgt ccagtccaag acacagattc acccaggcag
2041 actctcacgg tcttgatcaa agacaatggg gagccttcgc tctccaccac tgctaccctc
2101 actgtgtcag taaccgagga ctctcctgaa gcccgagccg agttcccctc tggctctgcc
2161 ccccgggagc agaaaaaaaa tctcaccttt tatctacttc tttctctaat cctggtttct
2221 gtggggtttg tggtcacagt gttcggagta atcatattca aagtttacaa gtggaagcag
2281 tctagagacc tataccgagc cccggtgagc tcactgtacc gaacaccagg gccctccttg
2341 cacgcggacg ccgtgcgggg aggcctgatg tcgccgcacc tttaccatca ggtgtatctc
2401 accacggact cccgccgcag cgacccgctg ctgaagaaac ctggtgcagc cagtccactg
2461 gccagccgcc agaacacgct gcggagctgt gatccggtgt tctataggca ggtgttgggt
2521 gcagagagcg cccctcccgg acagcaagcc ccgcccaaca cggactggcg tttctctcag
2581 gcccagagac ccggcaccag cggctcccaa aatggcgatg acaccggcac ctggcccaac
2641 aaccagtttg acacagagat gctgcaagcc atgatcttgg cgtccgccag tgaagctgct
2701 gatgggagct ccaccctggg agggggtgcc ggcaccatgg gattgagcgc ccgctacgga
2761 ccccagttca ccctgcagca cgtgcccgac taccgccaga atgtctacat cccaggcagc
2821 aatgccacac tgaccaacgc agctggcaag cgggatggca aggccccagc aggtggcaat
2881 ggcaacaaga agaagtcggg caagaaggag aagaagtaac atggaggcca ggccaagagc
2941 cacagggcgg cctctcccca accagcccag cttctcctta cctgcaccca ggcctcagag
3001 tttcagggct aacccccaga atactggtag gggccaaggc catgctcccc ttgggaaaca
3061 gaaacaagtg cccagtcagc acctacccct tcccccccag ggggttgaat atgcaaaagc
3121 agttccgctg ggaaccccca tccaatcaac tgctgtaccc atgggggtag tggggttact
3181 gtagacacca agaaccattt gccacacccc gtttagttac agctgaactc ctccatcttc
3241 caaatcaatc aggcccatcc atcccatgcc tccctcctcc ccaccccact ccaacagttc
3301 ctctttcccg agtaaggtgg ttggggtgtt gaagtaccaa gtaacctaca agcctcctag
3361 ttctgaaaag ttggaagggc atcatgacct cttggcctct cctttgattc tcaatcttcc
3421 cccaaagcat ggtttggtgc cagccccttc acctccttcc agagcccaag atcaatgctc
3481 aagttttgga ggacatgatc accatcccca tggtactgat gcttgctgga tttagggagg
3541 gcattttgct accaagcctc ttcccaacgc cctggggacc agtcttctgt tttgtttttc
3601 attgtttgac gtttccactg catgccttga cttcccccac ctcctcctca aacaagagac
3661 tccactgcat gttccaagac agtatggggt ggtaagataa ggaagggaag tgtgtggatg
3721 tggatggtgg gggcatggac aaagcttgac acatcaagtt atcaaggcct tggaggaggc
3781 tctgtatgtc ctcaggggac tgacaacatc ctccagattc cagccataaa ccaataacta
3841 ggctggaccc ttcccactac ataatagggc tcagcccagg cagccagctt tgggctgagc
3901 taacaggacc aatggattaa actggcattt cagtccaagg aagctcgaag caggtttagg
3961 accaggtccc cttgagaggt cagaggggcc tctgtgggtg ctgggtactc cagaggtgcc
4021 actggtggaa gggtcagcgg agccccagca ggaagggtgg gccagccagg ccattcttag
4081 tccctgggtt ggggaggcag ggagctaggg cagggaccaa atgaacagaa agtctcagcc
4141 caggatgggg cttcttcaac agggcccctg ccctcctgaa gcctcagtcc ttcaccttgc
4201 caggtgccgt ttctcttccg tgaaggccac tgcccaggtc cccagtgcgc cccctagtgg
4261 ccatagcctg gttaaagttc cccagtgcct ccttgtgcat agaccttctt ctcccacccc
4321 cttctgcccc tgggtccccg gccatccagc ggggctgcca gagaacccca gacctgccct
4381 tacagtagtg tagcgccccc tccctctttc ggctggtgta gaatagccag tagtgtagtg
4441 cggtgtgctt ttacgtgatg gcgggtgggc agcgggcggc gggctccgcg cagccgtctg
4501 tccttgatct gcccgcggcg gcccgtgttg tgttttgtgc tgtgtccacg cgctaaggcg
4561 accccctccc ccgtactgac ttctcctata agcgcttctc ttcgcatagt cacgtagctc
4621 ccaccccacc ctcttcctgt gtctcacgca agttttatac tctaatattt atatggcttt
4681 ttttcttcga caaaaaaata ataaaacgtt tcttctgaaa aaaaaaaaaa aaaaaaaaa
//