LOCUS BC019075 2484 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEP domain containing 1B, mRNA (cDNA clone MGC:29639
IMAGE:5091386), complete cds.
ACCESSION BC019075
VERSION BC019075.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2484)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2484)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: p Column: 23.
FEATURES Location/Qualifiers
source 1..2484
/db_xref="H-InvDB:HIT000038535"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29639 IMAGE:5091386"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2484
/gene="DEPDC1B"
/gene_synonym="FLJ11252"
/gene_synonym="XTP1"
/db_xref="GeneID:55789"
/db_xref="HGNC:HGNC:24902"
CDS 37..1626
/gene="DEPDC1B"
/gene_synonym="FLJ11252"
/gene_synonym="XTP1"
/codon_start=1
/product="DEP domain containing 1B"
/protein_id="AAH19075.1"
/db_xref="GeneID:55789"
/db_xref="HGNC:HGNC:24902"
/translation="MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCF
TAAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRH
LYRFPPSSPLKPYPKKPPNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHS
IAIGEVPACRLVHRRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFII
HNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIA
DYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQLLMMMM
ARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEI
LKLPLALQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRSYGSQE
PLAALLEEVITDAKLSNKEKKKKLKQFQKSYPEVYQERFPTPESAALLFPEKPKPKPQ
LLMWALKKPFQPFQRTRSFRM"
BASE COUNT 765 a 445 c 517 g 757 t
ORIGIN
1 cgctggcgcg gctgcggccg ctgctgccta cgcgccatgg agcatcgcat cgtggggccc
61 gggccgtacc gagctaccag gctgtggaat gagaccgtgg agctttttcg tgctaagatg
121 ccgttacgga aacatcgctg tcgtttcaag agctatgagc attgtttcac agcggccgaa
181 gctgtggatt ggctgcatga gctgctgagg tgcagtcaaa acttcggccc tgaagtgacc
241 cgcaaacaaa cggtccagct gctaaaaaaa ttcctgaaga atcacgttat tgaagacatc
301 aagggaaaat ggggtgagga agattttgaa gacaatcgtc acttatacag atttcctcct
361 tcttcacccc tgaaaccata tccaaagaag cccccaaacc aaaaggatgt tattaaattt
421 ccagaatgga atgatctccc accaggcact tcacaagaga acatcccagt gaggccagtt
481 gtgatgaatt ctgagatgtg gtacaagcgt cacagtattg caattggaga ggtgccagct
541 tgccgtcttg tccaccgcag acagctgaca gaggccaatg tagaagagat atggaagtct
601 atgacattat catacttaca gaaaattctt ggcctggatt ccttagaaga agttttagac
661 gtcaaacttg tcaattcgaa gttcatcatc cataatgtat atagtgttag caagcaggga
721 gttgttattc ttgatgacaa gtcaaaagaa cttcctcatt gggtgctgtc agctatgaag
781 tgtttggcaa attggcccaa ctgttctgat ttgaagcagc ctatgtactt gggatttgaa
841 aaagatgtct ttaaaaccat agctgattac tatggtcact tgaaagagcc tctacttaca
901 tttcatcttt ttgatgcttt tgtcagtgta ctgggtttgt tacagaagga gaaagtggca
961 gttgaagcat ttcagatttg ctgccttctc ctacctcctg aaaataggag aaagttacag
1021 ctattgatga tgatgatggc aaggatttgc ttaaacaaag agatgccacc cctgtgtgat
1081 ggctttggta cccgaacact gatggttcag acattttccc gttgcatctt gtgttccaag
1141 gatgaagtgg acttggatga gttattagct gctagattgg taacgtttct gatggacaat
1201 taccaggaaa ttctgaaact ccctttggcc ttgcagacct ctatagagga gcgtgtggct
1261 catctacgaa gagtccagat aaaataccca ggagctgata tggatatcac tttatctgct
1321 ccatcatttt gccgtcaaat tagtccagag gaatttgaat atcaaagatc atatggctct
1381 caggaacctc tggcagcctt gttggaggaa gtcataacag atgccaaact ctccaacaaa
1441 gagaaaaaga agaaactgaa gcagtttcag aaatcctatc ctgaagtcta tcaagaacga
1501 tttcctacac cagaaagtgc agcacttctg tttcctgaaa aacccaaacc gaaaccacag
1561 ctgctaatgt gggcactaaa gaagcctttc caaccatttc aaagaactag aagttttcga
1621 atgtaataat acttccacag caacaggtgc tagagaccac tgttgttgtt ttgagtgaat
1681 ggtggttagg agaaagactt tggtggtgga agaaagaaaa gcataaaaca aagactactg
1741 aaatatagat aaagattgcc ttagttttta aaaatgtttg gccattagta tttttataaa
1801 actcaatgct agttttaaag tgtataaatt ggttaaaatt tatgagtcaa atatatagtg
1861 ataatgttaa catgtttgta attgctacag aatttaaggg tatttttatc tctgtgcttt
1921 ctttttcatg gtgtttatta aataattgtg tatatacatc ctagctactg atatctttat
1981 tatagcctta agacttaatt ttaagtctta aaaatagtgt gtatacttga ataagaaaga
2041 cactgggtac tgttactgtg atgctattga cttagtagcc aattatcatt tctcctgtat
2101 aaattccagt ttttattgct gcacataaat tttttaatgt cttatattgt gatagctatg
2161 tcttttattg cagatttatt ggatgttatg acagatttta ctaaagctag tgtttttata
2221 acatatatat tagttgatgt ttacctataa gtggagtaga ttttcatctg cctgcaatgg
2281 tataatttca gtcttagcta aaaatggaaa gttgaactgg ataaattctt tgggtaccct
2341 tagacctctg attctaagtc aaatgcaaat gggttaaata aaatgagact acttccttta
2401 taaatatatt ttcatccttt tgaaagtaag tgaaatgtaa ataaacttat tttttttaaa
2461 aatgccaaaa aaaaaaaaaa aaaa
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