LOCUS BC019038 2580 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens small nuclear RNA activating complex, polypeptide 1,
43kDa, mRNA (cDNA clone MGC:20773 IMAGE:4590014), complete cds.
ACCESSION BC019038
VERSION BC019038.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2580)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2580)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC019038.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: l Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923159.
FEATURES Location/Qualifiers
source 1..2580
/db_xref="H-InvDB:HIT000038516"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20773 IMAGE:4590014"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2580
/gene="SNAPC1"
/gene_synonym="PTFgamma"
/gene_synonym="SNAP43"
/db_xref="GeneID:6617"
/db_xref="HGNC:HGNC:11134"
/db_xref="MIM:600591"
CDS 9..1115
/gene="SNAPC1"
/gene_synonym="PTFgamma"
/gene_synonym="SNAP43"
/codon_start=1
/product="small nuclear RNA activating complex,
polypeptide 1, 43kDa"
/protein_id="AAH19038.1"
/db_xref="GeneID:6617"
/db_xref="HGNC:HGNC:11134"
/db_xref="MIM:600591"
/translation="MGTPPGLQTDCEALLSRFQETDSVRFEDFTELWRNMKFGTIFCG
RMRNLEKNMFTKEALALAWRYFLPPYTFQIRVGALYLLYGLYNTQLCQPKQKIRVALK
DWDEVLKFQQDLVNAQHFDAAYIFRKLRLDRAFHFTAMPKLLSYRMKKKIHRAEVTEE
FKDPSDRVMKLITSDVLEEMLNVHDHYQNMKHVISVDKSKPDKALSLIKDDFFDNIKN
IVLEHQQWHKDRKNPSLKSKTNDGEEKMEGNSQETERCERAESLAKIKSKAFSVVIQA
SKSRRHRQVKLDSSDSDSASGQGQVKATRKKEKKERLKPAGRKMSLRNKGNVQNIHKE
DKPLSLSMPVITEEEENESLSGTEFTASKKRRKH"
BASE COUNT 870 a 422 c 512 g 776 t
ORIGIN
1 cgggtgccat ggggactcct cccggcctgc agaccgactg cgaggcgctg ctcagccgct
61 tccaggagac ggacagtgta cgcttcgagg acttcacgga gctctggaga aacatgaagt
121 tcgggactat cttctgtggc agaatgagaa atttagaaaa gaacatgttt acaaaagaag
181 ctttagcttt ggcttggcga tattttttac ctccatacac cttccagatc agagttggtg
241 ctttgtatct gctatatgga ttatataata cccaactgtg tcaaccaaaa caaaagatca
301 gagttgccct gaaggattgg gatgaagttt taaaatttca gcaagattta gtaaatgcac
361 agcattttga tgcagcttat atttttagga agctacgact agacagagca tttcacttta
421 cagcaatgcc caaattgctg tcatatagga tgaagaaaaa aattcaccga gctgaagtta
481 cagaagaatt taaggaccca agtgatcgtg tgatgaaact tatcacttct gatgtattag
541 aggaaatgct gaatgttcat gatcattatc agaacatgaa acatgtaatt tcagttgata
601 agtccaagcc agataaagcc ctcagcttga taaaggatga tttttttgac aatattaaga
661 acatagtttt ggagcatcag cagtggcaca aagacagaaa gaatccatcc ttaaagtcaa
721 aaactaatga tggagaagaa aaaatggaag gaaattcaca agaaacggag agatgtgaaa
781 gggcagaatc attagcgaaa ataaaatcaa aggccttttc agttgtcata caggcatcca
841 aatcaagaag gcatcgtcaa gtcaaactcg actcttctga ctctgattct gcatctggtc
901 aagggcaagt caaagcaact aggaaaaaag agaagaaaga aagattgaaa ccagcaggaa
961 ggaagatgtc tctcagaaac aaaggcaatg tgcagaatat acacaaggaa gataaacctt
1021 taagtctgag tatgcctgta attacagaag aagaagagaa tgaaagtttg agtggaacag
1081 agttcactgc atccaagaag aggagaaaac actgaacaaa gagcctggtg tagtttttaa
1141 ttttgagttt tctgacagaa gaaaagattg atattttgtg tattgaacag gaagactgcc
1201 agtattaaaa aaatccttct gggaatctgt aggttatttc ttggaaattg caatacgtag
1261 ttctagaata aaagtacaaa aaattagaat aagaattctt taacattttc tttaatgatt
1321 tgcataaatg gagataaaac ttgtatttag tatgtaatag aaaaaattct gttattcgca
1381 gattgttact atttcctata aggttttgtg atactatact gtcctaatac agtctggtaa
1441 tactattcta ttttatttaa aatatttttt attgaaatat taatgtttat tacatgcaaa
1501 taactatttt gtatctacag tcggataatg gattttttat tttgtatatt tattctattt
1561 tgtatattgt taagtgcaat aaagtttttg ccttgcttta ttttttaata cataaaactt
1621 acattctcat aacgtgattg ataacttagg aagttcacaa tgtattttct acttctgcaa
1681 ttaaatattc tttagtgctt gtttattatt actaaatact aattaagtac taacaagtac
1741 ttaaatacta atgtattaag tatttaagta ctttctaata aaatctttaa caataataat
1801 gtaaatttca gaatgtgtct ctggtacaga atagttgata ttaacagaaa aaaaaaaatc
1861 tgtagcttca tgaatatgcc actctgttaa tttcttgttc cagacatttt aatagagatt
1921 gcttgagcca tgttgtttga attgctgcca atagcagacc atatccctat catgttgttg
1981 gctcaactgt tttttttttt ttccctaata gagatggagt atcgctgtgt tgctcaggct
2041 ggtcttgaac tcctgggctc aagctatcct cctgcctcgg cctcccaaag tactgggatt
2101 ataggtgtga gctactgtac ccagccttaa cctgtttcac agttgattat acttcatgct
2161 gttttccagc atggtattat taagggattt aaagtttggg ttgcatgcct gtaatcccag
2221 cattttggga ggccgaggtg ggcggatcac gaggtcagga gatcgagacc atcgtgacta
2281 acacagtgaa accccgtctc taataaaaat acgaaaaatt agccaggcgt ggtggcgggc
2341 gcctgtaatc ccagctactc gggaagctga ggcaggagaa tggtgtgaac ccagtgagcc
2401 gagatcgtgc cactgcactc cagcctgggc aacagagtga gacttcgtct caaaaaaaaa
2461 aaaaaaagtt tgggttgaag atcaaattcg tgatatctct atatctaatc tttaaaaatc
2521 agaatgctaa tgctgacgca aataaaattt tcatttatta gcaaaaaaaa aaaaaaaaaa
//