LOCUS BC018931 1516 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:14442
IMAGE:4303926), complete cds.
ACCESSION BC018931
VERSION BC018931.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1516)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1516)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC018931.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: o Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51599152.
FEATURES Location/Qualifiers
source 1..1516
/db_xref="H-InvDB:HIT000038479"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14442 IMAGE:4303926"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1516
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
CDS 136..942
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/codon_start=1
/product="calpain, small subunit 1"
/protein_id="AAH18931.1"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
/translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG
GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR
RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS"
BASE COUNT 354 a 448 c 428 g 286 t
ORIGIN
1 ggtgcagtgt ccgacccgag agttgcggcc tgagtcaccg gccccgccct ccggagccgg
61 acgctgcggg aggcccggga gcggcagtgg aaccgactcc cagaactccg gacgtgtgcg
121 gcgtgagtcg cagccatgtt cctggttaac tcgttcttga agggcggcgg cggcggcggc
181 gggggaggcg ggggcctggg tgggggcctg ggaaatgtgc ttggaggcct gatcagcggg
241 gccgggggcg gcggcggcgg cggcggcggc ggcggcggtg gaggaggcgg cggtggcggt
301 ggaacggcca tgcgcatcct aggcggagtc atcagcgcca tcagcgaggc ggctgcgcag
361 tacaacccgg agcccccgcc cccacgcaca cattactcca acattgaggc caacgagagt
421 gaggaggtcc ggcagttccg gagactcttt gcccagctgg ctggagatga catggaggtc
481 agcgccacag aactcatgaa cattctcaat aaggttgtga cacgacaccc tgatctgaag
541 actgatggtt ttggcattga cacatgtcgc agcatggtgg ccgtgatgga tagcgacacc
601 acaggcaagc tgggctttga ggaattcaag tacttgtgga acaacatcaa aaggtggcag
661 gccatataca aacagttcga cactgaccga tcagggacca tttgcagtag tgaactccca
721 ggtgcctttg aggcagcagg gttccacctg aatgagcatc tctataacat gatcatccga
781 cgctactcag atgaaagtgg gaacatggat tttgacaact tcatcagctg cttggtcagg
841 ctggacgcca tgttccgtgc cttcaaatct cttgacaaag atggcactgg acaaatccag
901 gtgaacatcc aggagtggct gcagctgact atgtattcct gaactggagc cccagacccg
961 ccccctcacc gccttgctat aggagtcacc tggagcctcg gtctctccca gggccgatcc
1021 tgtctgcagt cacatctttg tggggcctgc tgacccacaa gcttttgttc tctcagtact
1081 tgttacccag cttctcaaca tccagggccc aatttgccct gcctggagtt ccccctggct
1141 ctaggacact ctaacaagct ctgtccacgg gtctccccat tcccaccagg ccctgcacac
1201 acccactccg taacctctcc cctgtacctg tgccaagcct agcacttgtg atgcctccat
1261 gccccgaggg ccctctctca gttctgggag gatgactcca gtccctgcac gccctggcac
1321 acccttcacg gttgctaccc aggcggccaa gctccagacc gtgccagacc caggtgcccc
1381 agtgcctttg tctatattct gctcccagcc tgccaggccc aggaggaaat aaacatgccc
1441 cagttgctga tctcaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaa
//