LOCUS BC018918 2581 bp mRNA linear HUM 19-JUN-2008
DEFINITION Homo sapiens tetratricopeptide repeat domain 38, mRNA (cDNA clone
MGC:12603 IMAGE:4130906), complete cds.
ACCESSION BC018918
VERSION BC018918.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2581)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2581)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC018918.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: i Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8923627.
FEATURES Location/Qualifiers
source 1..2581
/db_xref="H-InvDB:HIT000038471"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12603 IMAGE:4130906"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2581
/gene="TTC38"
/db_xref="GeneID:55020"
/db_xref="HGNC:HGNC:26082"
CDS 18..1427
/gene="TTC38"
/codon_start=1
/product="tetratricopeptide repeat domain 38"
/protein_id="AAH18918.2"
/db_xref="GeneID:55020"
/db_xref="HGNC:HGNC:26082"
/translation="MAAASPLRDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTND
KSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVEISRT
QPLTRREQLHVSAVETFANGNFPKACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQ
MRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVH
TVAHIHEMKAEIKDGLEFMQHSETLWKDSDMLACHNYWHWALYLIEKGEYEAALTIYD
THILPSLQANDAMLDVVDSCSMLYRLQMEGVSVGQRWQDVLPVARKHSRDHILLFNDA
HFLMASLGAHDPQTTQELLTTLRDASESPGENCQHLLARDVGLPLCQALVEAEDGNPD
RVLELLLPIRYRIVQLGGSNAQRDVFNQLLIHAALNCTSSVHKNVARSLLMERDALKP
NSPLTERLIRKAATVHLMQ"
BASE COUNT 579 a 724 c 698 g 580 t
ORIGIN
1 ctccgacccg gcgcaacatg gccgcagcct cgcctctgcg cgactgccag gcctggaagg
61 atgcgaggct cccgctctcc accacaagca acgaagcctg caagctgttc gatgccacgc
121 tgacccagta tgtaaaatgg accaatgaca agagtctcgg tggcatcgag ggctgcctgt
181 caaagctcaa agcagcagat ccaacctttg tgatgggcca cgccatggct actggccttg
241 tgctgattgg cactggaagc tccgtgaagc tggacaaaga gctggacctg gctgtgaaga
301 caatggtgga gatttcaaga acccagccgc tgacaaggcg ggagcagctg cacgtgtctg
361 cagtagagac atttgccaat gggaactttc cgaaagcctg tgaactatgg gaacagattc
421 tccaggacca cccgacagac atgttggccc tgaaattttc ccatgatgct tatttttacc
481 tgggctatca ggaacagatg agagattctg ttgctcgaat ttaccccttc tggacacctg
541 acatccccct aagcagctat gtgaaaggca tctactcttt tggcttgatg gaaaccaact
601 tctacgacca ggcagaaaaa ctcgccaaag aggctttatc tattaacccg acagacgcat
661 ggtcggtgca caccgtcgct cacatccacg agatgaaagc agagatcaag gatgggttgg
721 aattcatgca gcactcagag accctctgga aggactctga tatgttggct tgtcataact
781 attggcactg ggctttatat ctgattgaga agggcgaata tgaggccgcg ctgaccatct
841 acgataccca catccttccc agcctgcagg ccaacgatgc aatgctggac gtggtggaca
901 gctgctccat gctctaccgc ctgcagatgg aaggagtgtc tgtgggccag cggtggcagg
961 atgtcctgcc tgtggcccgg aagcacagcc gagaccacat cctgctgttc aatgacgcac
1021 acttcctgat ggcatccctg ggtgcacacg acccccagac cacacaggag ctgctgacca
1081 ccctgcggga cgccagcgaa tccccagggg agaactgcca gcacctcctg gcccgagacg
1141 tggggctgcc cctgtgccag gccctggtgg aggctgagga cgggaaccct gaccgcgtcc
1201 tggagctgct cctgcccatc cgctaccgga tcgtccagct cggtgggagc aatgcccaga
1261 gagacgtctt caaccagctg ctgattcacg cggccttaaa ctgcacctcc agcgtccata
1321 agaacgtagc ccggagcctt ctgatggagc gtgatgcctt gaagcccaac tcgcccctga
1381 ccgagcggct catccgcaag gcagctaccg tccacctcat gcagtgagcc agcctggccg
1441 cctccaccct gcagaacctc agtggtggcg tcactgcgtc cagtcagctg ctccaccggg
1501 ttagggtcag gagacggcca gagcctgttt gttagggctg ttagagggtg atcttcagtt
1561 ttacaggaag tgggtcacgg gttaatttta aatgtgattc cgaatctcct ttcagtcctc
1621 gagaagggcc aatgagcatt tttcagcagt cacagccagt gtgagtgctg ctctttccac
1681 ctgccttgca aattctgttt cccaggggaa tgtgtctact gcctggtggt tcaaaggttg
1741 gaaggcaggg cagaggtggg ggctgattct gctgggacag gtcttccaga ggcagcctcc
1801 ccccactgcc tgtccccgtc cccaccaggc tgcccttggg atggaccttt tcattctttt
1861 ctttatattc tagacagtct ctgttgtctc attgtgttgc tgtcccattt ttcaggtgag
1921 ggtaccgggg taggggagtg gcctgcccag ggtcacacta tgagaggccc ccacctgctg
1981 cctttggacg cagccccctg ctgctgcatc caccaccctt cttacagatc agcgcgcaca
2041 tggggtcctt ctgctgtctc tggggcgagt cttggagccc cctggggggc tctgttggtg
2101 ctgatttgga cccgtttctc tttttaaact gcacatcata acagggcttc atgtcgagca
2161 tgattttaat cataaatgca cttctgaggt gcaaggattg agctcagagc tgctctgttg
2221 tggcaaaacc caaagtgctg tgatgtgtgg ctgtgacaag cctggagcgg gtcctgtgag
2281 cgccgcctct gtctcctgct tccccactga acgcctgctg aatgtgccgc tgactcagct
2341 gtgctgcttt cagccctcct gtgaggggcg gtcccagtgc acagatgttt ttcaagttcc
2401 tcagtttgta ctgaaattag ggattcatca gggcaggaag caggcaggcc tctcagaagg
2461 gagaggaggc ctccaaatct attgagtccc cacagtttgc tcaagcccag gcaaatttct
2521 gtgattaaaa tgaattcatc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2581 a
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