LOCUS BC018906 1784 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens B-cell linker, mRNA (cDNA clone MGC:10542
IMAGE:4053894), complete cds.
ACCESSION BC018906
VERSION BC018906.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1784)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1784)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC018906.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: d Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40353774.
FEATURES Location/Qualifiers
source 1..1784
/db_xref="H-InvDB:HIT000038468"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10542 IMAGE:4053894"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1784
/gene="BLNK"
/gene_synonym="BASH"
/gene_synonym="BLNK-s"
/gene_synonym="Ly57"
/gene_synonym="SLP-65"
/gene_synonym="SLP65"
/db_xref="GeneID:29760"
/db_xref="HGNC:HGNC:14211"
/db_xref="MIM:604515"
CDS 93..1463
/gene="BLNK"
/gene_synonym="BASH"
/gene_synonym="BLNK-s"
/gene_synonym="Ly57"
/gene_synonym="SLP-65"
/gene_synonym="SLP65"
/codon_start=1
/product="B-cell linker"
/protein_id="AAH18906.1"
/db_xref="GeneID:29760"
/db_xref="HGNC:HGNC:14211"
/db_xref="MIM:604515"
/translation="MDKLNKITVPASQKLRQLQKMVHDIKNNEGGIMNKIKKLKVKAP
PSVPRRDYASESPADEEQQWSDDFDSDYENPDEHSDSEMYVMPAEENADDSYEPPPVE
QETRPVHPALPFARGEYIDNRSSQRHSPPFSKTLPSKPSWPSEKARLTSTLPALTALQ
KPQVPPKPKGLLEDEADYVVPVEDNDENYIHPTESSSPPPEKAPMVNRSTKPNSSTPA
SPPGTASGRNSGAWETKSPPPAAPSPLPRAGKKPTTPLKTTPVASQQNASSVCEEKPI
PAERHRGSSHRQEAVQSPVFPPAQKQIHQKPIPLPRFTEGGNPTVDGPLPSFSSNSTI
SEQEAGVLCKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVVFFNKR
VYNIPVRFIEATKQYALGRKKNGEEYFGSVAEIIRNHQHSPLVLIDSQNNTKDSTRLK
YAVKVS"
BASE COUNT 597 a 428 c 362 g 397 t
ORIGIN
1 cagaggctta ccatgctgct ccctaggagg gccaggaact gctgacgtga ccactggaca
61 gttattcgtg tctcttacaa ttaccaaaca gaatggacaa gcttaataaa ataaccgtcc
121 ccgccagtca gaagttgagg cagcttcaaa agatggtcca tgatattaaa aacaatgaag
181 gtggaataat gaataaaatc aaaaagctaa aagtcaaagc acctccaagt gttcctcgaa
241 gggactacgc ttcagagagc cctgctgacg aagagcagca gtggtccgat gactttgaca
301 gcgactatga aaatccagat gagcactcgg actcagagat gtacgtgatg cccgccgagg
361 agaacgctga tgacagctac gagccgcctc cagtagagca ggaaaccagg ccggttcacc
421 cagccctgcc cttcgccaga ggcgagtata tagacaatcg atcaagccag aggcattccc
481 cacccttcag caagacactt cccagtaagc ccagctggcc ttcagagaaa gcaaggctca
541 cctccaccct gccggccctg actgctttgc agaaacctca agtcccaccc aaacccaaag
601 gcctccttga ggatgaggct gattatgtgg tccccgtgga agataatgat gaaaactata
661 ttcatcccac agaaagcagt tcacctccac ctgaaaaagc tcccatggtg aatagatcaa
721 ccaagccaaa ttcctcaacg cccgcctctc ctccaggaac agcttcaggt cgaaacagtg
781 gggcctggga aaccaagtca cctccaccag ctgcaccatc cccgttgcca cgggccggga
841 aaaaaccaac gacaccactg aagacaactc cagttgcctc tcaacagaat gcttcaagtg
901 tttgtgaaga aaaacctata cctgctgaac gccaccgagg gtcaagtcac agacaagaag
961 ctgtgcagtc accagtgttt cctcctgccc agaaacaaat ccaccaaaaa cccatacctc
1021 tgccaagatt tacagaaggg ggaaacccaa ctgtggatgg gcccctaccc agcttttcat
1081 ctaattccac tatttcagaa caggaagctg gcgttctctg caagccatgg tatgctggag
1141 cctgtgatcg aaagtctgct gaagaggcat tgcacagatc aaacaaggat ggatcatttc
1201 ttattcggaa aagctctggc catgattcca aacaaccata tacactagtt gtattcttta
1261 ataagcgagt atataatatt cctgtgcgat ttattgaagc aacaaaacaa tatgccttgg
1321 gcagaaagaa aaatggtgaa gagtactttg gaagtgttgc tgaaatcatc aggaatcatc
1381 aacatagtcc tttggttctt attgacagtc agaataacac aaaagattcc accagactga
1441 agtatgcagt taaagtttca taaaggggga aaaaaaagat caataccatt gcttcagaca
1501 ctttcccaaa gtttctcctt ttgagaaaaa gtcccaaaac ttcatatttt ggattatgaa
1561 tcatccagta ataaaatgga agatggagtc agctattgaa gtggtcatcc atttcttttt
1621 aagaagctca tgtggacttg ttctattgcc tgacctgatg aactgttaat atctggtgag
1681 gttgagttat catgctacta atattttcca aataaatatt tttattttta aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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