LOCUS BC018788 1541 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens hyaluronan binding protein 4, mRNA (cDNA clone MGC:825
IMAGE:3502216), complete cds.
ACCESSION BC018788
VERSION BC018788.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1541)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1541)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: d Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..1541
/db_xref="H-InvDB:HIT000038459"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:825 IMAGE:3502216"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1541
/gene="HABP4"
/gene_synonym="IHABP4"
/gene_synonym="Ki-1/57"
/db_xref="GeneID:22927"
CDS 80..1006
/gene="HABP4"
/gene_synonym="IHABP4"
/gene_synonym="Ki-1/57"
/codon_start=1
/product="HABP4 protein"
/protein_id="AAH18788.1"
/db_xref="GeneID:22927"
/translation="MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILRE
AERRRQQQLQRKRRDEAAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPV
AQRPDSPGGGLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQA
DFTAEKFPDEKVPELEVEEETQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPSKAV
VIHKSKYRDDMVKDDYEDDSHVFRKPANDITSQLEINFGNLPRPGRGARGGTRGGRGR
IRRAENYGPRAEVVMQDVAPNPDDPEDFPALS"
BASE COUNT 435 a 365 c 474 g 267 t
ORIGIN
1 ggcatgggtc ctggccgccg gcttcgctga gacgcgctcg cgtgggctgc cctcccgggc
61 ccgcagtggt cgcggcggca tgaagggcgc tctggggagt cccgtggctg ccgctggcgc
121 cgcgatgcag gagagtttcg gctgcgtggt ggccaaccgc ttccatcagc tgctggacga
181 cgagtcggac ccgttcgaca tcctgcgcga ggccgagcgc cggcgccagc agcagctgca
241 gcgcaagagg cgcgacgagg cggcggcggc ggccggggcc ggtccccgcg gcggcaggag
301 cccagccggg gcctcgggcc acagagccgg cgcgggcggc cggagggagt cgcagaagga
361 gcgcaagagc ctcccggcgc ccgtcgctca gcggcccgat agccccgggg gcggcctgca
421 ggcgccgggc cagaagcgga ctcctagaag aggggagcag caaggatgga atgacagccg
481 tgggccggag gggatgctcg aaagagctga gcggagatcc tacagggaat accgacccta
541 tgagacagag aggcaggcag acttcacagc tgagaagttt ccagatgaaa aagttcctga
601 gttggaggta gaagaagaaa cccaagttca agagatgact ttagatgagt ggaaaaatct
661 tcaagaacag accagaccaa agcctgagtt taacatccgg aaaccagaat ccactgttcc
721 ttccaaagcc gtggtgattc acaagtcaaa atacagagat gatatggtaa aagatgacta
781 tgaggacgat tcccatgttt tccggaaacc cgccaatgac atcacatccc agctggagat
841 taattttggt aacctccctc gtcctgggcg tggagccaga ggaggcaccc ggggaggccg
901 gggaaggatc aggagggcag agaactatgg acccagagca gaagtggtga tgcaagatgt
961 tgcccccaac ccagatgacc cggaagattt ccctgcgctg tcttgaaaga gccctgtttc
1021 ccagcaccgc ggagctgcac tgcacacctg tggggagact tttccagctg ggccaaggga
1081 gtcagactct aagaacaata gatgttgctt ttcccgtgtc atgtaaattt gttgcacttt
1141 tttgggctga gctgttagag gggcttctcc agaggctcga gagcaggcca tttcccaaga
1201 agatgaagaa tggtgactgt gtttttattg aaggaatttc aaatgaagaa taatgtttaa
1261 aatgtgtata tagagatagt atagactcct ccgcggaagc atggagggaa aggaggttgt
1321 aaaatagact ccatggagac tcttaggaag cagtagattc ccgggggctg tgcctttagc
1381 gttagaggaa acacatagag ctggaactgt taatggaaag cagtcacagc tgagttttcg
1441 gagaccaaga aattaaaata caattgcact tacaaaaaaa aaaaaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//