LOCUS BC018775 3250 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens sorting nexin 33, mRNA (cDNA clone MGC:32065 IMAGE:4869639), complete cds. ACCESSION BC018775 VERSION BC018775.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3250) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3250) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 40 Row: k Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23397573. FEATURES Location/Qualifiers source 1..3250 /db_xref="H-InvDB:HIT000038452" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:32065 IMAGE:4869639" /tissue_type="Skin, melanotic melanoma, high MDR." /clone_lib="NIH_MGC_49" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3250 /gene="SNX33" /gene_synonym="SH3PXD3C" /gene_synonym="SNX30" /db_xref="GeneID:257364" /db_xref="HGNC:HGNC:28468" CDS 97..1821 /gene="SNX33" /gene_synonym="SH3PXD3C" /gene_synonym="SNX30" /codon_start=1 /product="sorting nexin 33" /protein_id="AAH18775.1" /db_xref="GeneID:257364" /db_xref="HGNC:HGNC:28468" /translation="MALKGRALYDFHSENKEEISIQQDEDLVIFSETSLDGWLQGQNS RGETGLFPASYVEIVRSGISTNHADYSSSPAGSPGAQVSLYNSPSVASPARSGGGSGF LSNQGSFEEDDDDDWDDWDDGCTVVEEPRAGGLGTNGHPPLNLSYPGAYPSQHMAFRP KPPLERQDSLASAKRGSVVGRNLNRFSCFVRSGVEAFILGDVPMMAKIAETYSIEMGP RGPQWKANPHPFACSVEDPTKQTKFKGIKSYISYKLTPTHAASPVYRRYKHFDWLYNR LLHKFTVISVPHLPEKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLS CLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSV LQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTY EAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRM VQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEK TLRMYDNL" BASE COUNT 693 a 978 c 896 g 683 t ORIGIN 1 attcagctgc gagtgcattc ttggactgcc ttgtgagcat ccccggtctg ggcaggaccc 61 tctccttccc atctttctat accacccagc ccagccatgg cactgaaagg ccgagccctc 121 tatgactttc acagtgagaa caaggaggaa atcagcatcc agcaggatga ggacctggtc 181 atctttagcg agacctcact ggatggctgg ctgcagggcc agaacagccg tggggagaca 241 gggctctttc ctgcctctta tgtggagatc gtccgttctg gcatcagcac caaccatgct 301 gactactcca gcagccctgc aggctctccc ggagcccagg tgagcttgta caacagcccc 361 agtgtggcca gcccagctag gagtggtggg ggcagtggct tcctctcaaa ccagggtagc 421 tttgaggagg atgatgatga tgactgggat gactgggacg acggatgcac agtggtggag 481 gagccacggg ctggtgggct gggcaccaac gggcaccctc ccctcaacct ctcctaccct 541 ggtgcctacc ccagccagca catggccttc cggcccaagc caccactgga gcggcaggac 601 agcctggcat ctgccaagcg aggcagtgtg gtgggccgta acctcaaccg tttctcatgc 661 tttgtgcgtt ctggagtgga ggccttcatc ctgggtgatg tgcccatgat ggccaagatc 721 gctgagacat actccattga aatgggccct cgtggccccc agtggaaggc caatccccac 781 ccatttgcct gctctgtgga ggaccccaca aaacagacca aattcaaggg catcaaaagc 841 tacatctcct acaagctcac acccacccat gctgcctcac ccgtctaccg gcgctacaaa 901 cactttgact ggctctataa ccgcctgcta cacaagttca ctgtcatctc ggtgccccac 961 ctgcctgaga agcaggccac tggccgcttc gaggaggact tcatcgaaaa gcggaagcgg 1021 agactcatcc tctggatgga ccacatgacc agccaccctg tgctctccca gtacgaaggc 1081 ttccagcatt tcctcagctg cctggatgac aagcagtgga agatgggcaa acgccgggcg 1141 gagaaggatg agatggtggg tgccagcttc ctgctcacct tccagatccc caccgagcac 1201 caggacttgc aggacgtgga agatcgcgtg gacactttca aggccttcag taagaagatg 1261 gacgacagcg tcctgcagct cagcactgtg gcatcagagc tggtgcgtaa acatgtgggg 1321 ggcttccgca aggaattcca gaagctgggc agtgccttcc aggccatcag tcattccttc 1381 cagatggacc cccccttttg ctctgaggcc ctcaacagtg ccatttctca cacgggccgt 1441 acctatgaag ccatcgggga gatgtttgct gagcagccca agaatgacct cttccagatg 1501 ctggacacac tgtctctcta ccagggcctg ctctccaact tccctgacat catccatcta 1561 caaaaaggcg ccttcgccaa ggtgaaggag agccaacgca tgagtgacga gggccgcatg 1621 gtgcaggacg aggcagacgg cattcgcagg cgctgccgcg tggtgggttt cgccctgcag 1681 gccgagatga accacttcca ccagcgccgt gagctcgact tcaagcacat gatgcagaac 1741 tacttgcgcc agcagatcct cttctaccag cgggtgggcc agcagctgga gaagaccctg 1801 cgcatgtatg acaacctctg accgcgtgtg cctgggcccc ctccttcccc tgggcctggt 1861 cactgcagtg taccccactt tcccgacctc cctataccag cagtgactgg gggaggggtc 1921 agcggtgggg gagataagcg gcctgtcctg cctcctggga gaaggagctt tcaaggagtc 1981 atgggtgccc ctgggaaatt ccccactcct tagaagtggg gcacagcagg ggtgagaata 2041 gagtcaggag ccctcgaggc caaggcctgg gctgccggtc agtcagtgaa ggtcaggcca 2101 gggtctcagc ctcccctaga gcctattttg cttgctcacc tggccactgc tgccttatcc 2161 attcagcaga caccgaggcc tgctgcaccc ttgggtcgga tgctgggcac ccagggctgt 2221 gacatgcctg ctcttcagga gtcctcagtg aaggtcgggg tcagacacag acagagtcaa 2281 tgcagtatga ctgatgttta agtgagggat ttctggaagc tcatagaagg gaccacagca 2341 ttccactggt cagggaagac tccatagagt aggcaacatt tgggcagtgt tttgaagaat 2401 gacaagggcc tgccagacag tacatggggg agaaggactt tcaggggaga ggaacagcat 2461 gggcaaagtt atggaggcat gcaaacatct ccctcttctc tcccttactt tccaagcaag 2521 ttaggtacgc tttccatggg gattctggcc tgtgtggtag gaagggatct cccttgctcc 2581 catgttgctg gctgtccgta catcaccctg tcccctgcag gagggggcta caggccatct 2641 ccctcctgta ggcctctgac tcccctccac ttttgggccc tcagcttatc tcgggcaggg 2701 gaccattgca gcatcctccc ctcctcggac tcaaggtgct gaggtataag ccctgggccc 2761 cagatccctg gtgacacctt cctggagaag actctcaaaa gtgactgtat atttgagttc 2821 accagcaata actccccaca ctcgaagcag gtccaaaccc aggatctcag ggtccttggg 2881 ctctgtggca ctgtcttccc aagatccttc ctgttgcaca atgggaaacc taagaggaaa 2941 aagacagggg cctgcttgcc cagccatgcg agggattcca tgcccacctg ccctctgtct 3001 gcctcgctgg aatgtgggcc cctgctcccc gtcaggttgt gctgtctctg acctatgttt 3061 acatccccga ggggtttctg cctcctcccc acccaggtca gggtgtggtc cagcagcttg 3121 ctgtggggtg ctgacatgtg tcaccactgc cccccttgcc cccggggggg tcatggtctc 3181 ctcctggatg ctgctccttg aatctttttt cttgataaac cttttacaat taaaaaaaaa 3241 aaaaaaaaaa //