LOCUS BC018762 1472 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 4, mRNA (cDNA clone MGC:31982
IMAGE:4641014), complete cds.
ACCESSION BC018762
VERSION BC018762.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1472)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1472)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: g Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111044.
FEATURES Location/Qualifiers
source 1..1472
/db_xref="H-InvDB:HIT000038445"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31982 IMAGE:4641014"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1472
/gene="SNX4"
/db_xref="GeneID:8723"
/db_xref="HGNC:HGNC:11175"
/db_xref="MIM:605931"
CDS 19..1371
/gene="SNX4"
/codon_start=1
/product="sorting nexin 4"
/protein_id="AAH18762.1"
/db_xref="GeneID:8723"
/db_xref="HGNC:HGNC:11175"
/db_xref="MIM:605931"
/translation="MEQAPPDPERQLQPAPLEPLGSPDAGLGAAVGKEAEGAGEESSG
VDTMTHNNFWLKKIEISVSEAEKRTGRNAMNMQETYTAYLIETRSVEHTDGQSVLTDS
LWRRYSEFELLRSYLLVYYPHIVVPPLPEKRAEFVWHKLSADNMDPDFVERRRIGLEN
FLLRIASHPILCRDKIFYLFLTQEGNWKETVNETGFQLKADSRLKALNATFRVKNPDK
RFTDLKHYSDELQSVISHLLRVRARVADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGL
QSAGHHMDVYASSIDDILEDEEHYADQLKEYLFYAEALRAVCRKHELMQYDLEMAAQD
LASKKQQCEELVTGTVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSK
NLEGREFVKNAWADIERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKECFSKM
"
BASE COUNT 500 a 268 c 365 g 339 t
ORIGIN
1 ccgcgccgaa ctgcagccat ggagcaggca cctccggacc ccgagcggca gctccagccg
61 gcgcccttgg agccgctggg ctccccagac gctgggctgg gggctgcggt cggcaaggaa
121 gcggaggggg ccggagaaga gagctctggg gtcgacacga tgacacacaa taatttttgg
181 ttgaagaaga tagaaatcag tgtttcagaa gcagaaaaac gaactggaag aaatgccatg
241 aacatgcaag aaacatatac tgcttacctc attgaaacaa ggtcagttga acataccgat
301 ggtcagagtg tcctaacaga ctcactatgg cggcgatata gtgaatttga gttgttgaga
361 agctaccttt tagtttacta tccacatatt gttgtgccac ctctgccaga aaaacgggca
421 gaatttgttt ggcataaact ctctgctgac aacatggatc cagattttgt ggagaggcga
481 cggattggtt tagaaaactt tctcttgagg attgcttcac atcccatcct ttgtagagac
541 aaaatcttct atctgttttt aacacaggaa ggtaactgga aggagactgt gaatgaaact
601 gggtttcagc tgaaggcaga ctccaggtta aaagcgctta atgcaacatt cagagtgaaa
661 aacccagaca agagatttac tgaccttaag cactatagtg atgaactgca gtctgtcatc
721 tcacatcttc ttcgagtcag agctagagta gcagatcgac tctatggtgt atataaagta
781 catgggaatt atggtcgagt tttcagtgaa tggagtgcca tagaaaaaga aatgggtgat
841 ggactgcaga gtgctggtca tcatatggat gtgtatgcat cttctattga tgatattttg
901 gaagatgaag aacattatgc agatcagtta aaagagtatc ttttttatgc agaagcattg
961 cgggctgtgt gcaggaaaca tgaacttatg cagtatgact tggagatggc tgctcaggac
1021 ttagcatcca agaagcagca gtgtgaggaa ctggtaactg ggactgtgag aacattctct
1081 ttgaagggaa tgactaccaa gctctttggt caagaaactc cagagcagag agaagccaga
1141 ataaaggtgc tagaagaaca aataaatgaa ggagaacaac agctaaagtc taaaaatctg
1201 gaaggcagag aatttgtgaa aaacgcatgg gctgatattg aacgcttcaa agaacaaaag
1261 aaccgagact taaaggaggc cctcataagc tatgcagtca tgcagatcag tatgtgcaaa
1321 aagggaattc aagtttggac caatgctaag gaatgcttta gcaagatgta atcctgtgaa
1381 ttgaatttct cttcaatcaa agtgccccaa aacagaagca caagtaaaaa aaaaaaaaaa
1441 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//