LOCUS BC018760 2220 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA
clone MGC:31978 IMAGE:4300396), complete cds.
ACCESSION BC018760
VERSION BC018760.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2220)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2220)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: c Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 26024192.
FEATURES Location/Qualifiers
source 1..2220
/db_xref="H-InvDB:HIT000089702"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31978 IMAGE:4300396"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2220
/gene="SNAP47"
/gene_synonym="HEL170"
/gene_synonym="SNAP-47"
/gene_synonym="SVAP1"
/db_xref="GeneID:116841"
/db_xref="HGNC:HGNC:30669"
CDS 254..1648
/gene="SNAP47"
/gene_synonym="HEL170"
/gene_synonym="SNAP-47"
/gene_synonym="SVAP1"
/codon_start=1
/product="synaptosomal-associated protein, 47kDa"
/protein_id="AAH18760.2"
/db_xref="GeneID:116841"
/db_xref="HGNC:HGNC:30669"
/translation="MRAARRGLHCAGAERPRRRGRLWDSSGVPQRQKRPGPWRTQTQE
QMSRDVCIHTWPCTYYLEPKRRWVTGQLSLTSLSLRFMTDSTGEILVSFPLSSIVEIK
KEASHFIFSSITILEKGHAKHWFSSLRPSRNVVFSIIEHFWRELLLSQPGAVADASVP
RTRGEELTGLMAGSQKRLEDTARVLHHQGQQLDSVMRGLDKMESDLEVADRLLTELES
PAWWPFSSKLWKTPPETKPREDVSMTSCEPFGKEGILIKIPAVISHRTESHVKPGRLT
VLVSGLEIHDSSSLLMHRFEREDVDDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPE
VIPILEVQFSKKMELLEDALVLRSARTSSPAEKSCSVWHAASGLMGCTLHREPPAGDQ
EGTALHLQTSLPALSEADTQELTQILRRMKGLALEAESELERQDEALDGVAAAVDRAT
LTIDKHNRRMKRLT"
BASE COUNT 505 a 634 c 651 g 430 t
ORIGIN
1 gaaggcgccc ggctccgaga cgaaggctac ccggcccgga gcctggccga cgccggggac
61 atcgaccccc aggcctcgga agtggctgtc ggcgagggcg cgcgtctcgc ggtccatcca
121 gctcagcacg ggtcgaagga ccctcctcct cacttccgcc ggagcggaaa cggtgaggac
181 cagcctcgga accagaagac gcagggcgcc gcgtttctgc cccaccagcg cctggggctc
241 cgggcctgca cgcatgcgcg cggctcgccg cggtcttcac tgcgcaggcg ccgagcggcc
301 gaggcgccgc ggtcggctct gggactcgtc tggcgtccct cagaggcaga agaggcctgg
361 accttggcgc acacagaccc aggaacagat gagcagggat gtctgcatcc acacctggcc
421 gtgcacctac tacctggagc ccaagaggcg atgggttact ggacagctgt ccttaacatc
481 gctgtcgctc aggttcatga ctgacagcac tggagagatt ctggtcagct tccccctctc
541 cagcatagtt gagatcaaga aggaggcttc acattttatc ttcagctcca tcaccatcct
601 ggagaagggc catgccaagc actggttcag ctccctgcgg ccaagtcgaa atgtggtctt
661 cagcatcatc gagcatttct ggagggagct gctgctgtct cagcctggag ccgtggcaga
721 cgcatctgtc ccaaggaccc ggggcgagga gctgacggga ctcatggctg gatcccagaa
781 acgcctggag gacacggcga gggtcctgca ccaccagggc cagcagctgg acagcgtcat
841 gagaggcctg gacaagatgg agtcagacct ggaggtggcg gacagattgc tgacagaact
901 ggaatctcct gcttggtggc cctttagctc caagctttgg aagacaccac cggaaacaaa
961 gcccagggaa gatgtctcca tgaccagttg tgaacccttt gggaaagaag ggatactgat
1021 aaaaattcct gctgttattt cccacagaac agagtctcac gttaaaccag ggaggctcac
1081 cgtccttgtg tctgggttgg aaatacatga ctccagttct ttgctcatgc acaggtttga
1141 aagagaagac gtggacgaca tcaaggtcca ctcaccttac gaaattagca tccgccagcg
1201 gtttattgga aagccagaca tggcctatcg tttgatatct gccaagatgc cagaggttat
1261 ccccatttta gaagtgcagt tcagcaagaa gatggagctg ttagaagatg cattggtgct
1321 cagaagcgca agaacctctt cccccgcaga gaagagctgc tcagtctggc atgcagcatc
1381 tgggctgatg ggctgtaccc tgcaccgtga gccacccgca ggagaccagg agggcacagc
1441 actgcacctg cagacaagcc tgccagccct ttctgaggca gatacccagg aactaaccca
1501 gatcctgagg aggatgaagg ggctggccct ggaggccgag agtgagctgg agagacaaga
1561 cgaagccctg gatggcgttg cagcagctgt ggacagggca accttgacca tcgacaagca
1621 caacaggcgg atgaagaggc tgacctaggg gcagaacgtc cctgcattcc tgtctcaccc
1681 tgcacatccc gctgagatgg agggctgggc ggcagtgcca gggctgcaga ggcctgtggc
1741 cctccggagt ggtcttcctc tggatggggc tgctactgtg gggctgcttc tgcaccaggg
1801 gcctccccag gtgtgcacca tgcctgcctc ccacttggct gtccctgctg ctgggcagga
1861 cccggccaca tgttctgcgg atgctgcaga agtgtggacc atggcgggac cccaaggaca
1921 cttggcacag gcctggaaga ggccgccctc gtcttgtctc ggctcccttt catggacaga
1981 ctggccttct tagctgtact ataaatttgt gagtgaagtt agagcccagc tcacttagcc
2041 agctcacttt gagggcatcc tataaacacc caactgttct tttatcgtct cggttttagc
2101 caaaagtgaa attagcatga ctgcatcttt caaacaaaaa tattgatttc tgcttttagg
2161 gccccgtttc catccagaaa taaagggaaa tgctggcttc aaaaaaaaaa aaaaaaaaaa
//