LOCUS BC018731 1985 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens hypoxia-inducible factor prolyl 4-hydroxylase, mRNA
(cDNA clone IMAGE:5017414), with apparent retained intron.
ACCESSION BC018731
VERSION BC018731.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1985)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1985)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: o Column: 23
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..1985
/db_xref="H-InvDB:HIT000089690"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5017414"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 430 a 571 c 558 g 426 t
ORIGIN
1 ggcagcggcg gtgacaggcc agcggcctga gaccgcggcg gccgaggagg cctcgaggcc
61 gcagtgggcg ccgccagacc actgccaggc tcaggcggcg gccgggctgg gcgacggcga
121 ggacgcaccg gtgcgtccgc tgtgcaagcc ccgcggcatc tgctcgcgcg cctacttcct
181 ggtgctgatg gtgttcgtgc acctgtacct gggtaacgtg ctggcgctgc tgctcttcgt
241 gcactacagc aacggcgacg aaagcagcga tcccgggccc caacaccgtg cccagggccc
301 cgggcccgag cccaccttag gtcccctcac ccggctggag ggcatcaagg tgaggacctc
361 cctgccccgc cgcgctccag gccctgcacg gctgagcccg agaggaccgg cgctcagccc
421 gggtccccac gctgcccccg gcgctgctct gcgtcggtcc cgcgcgctcc cactcactcg
481 cctgctgtcg ctctccgggc cggggcgact tggcccttct tgggcagcgc ggtctggcgc
541 cccagctgcc cgctgtgcgc cttttcctta ggtggggcac gagcgtaagg tccagctggt
601 caccgacagg gatcacttca tccgaaccct cagcctcaag ccgctgctct tcggtaagtc
661 cgccagatac tcctgggaag ggccaggggc tgcggtttgg tggccacctt gaggctcgtt
721 gtgaccacgt gacctctatt ttgaaaatgg ctgcttcaga gcagcccttc cagaggatta
781 ccaaagtgaa ggaccttccc cgtcctcgaa atagggtaac actccctctt atcccaactc
841 cctgcagtcc attcttccat cacagggctg gcagggtgag cctgaggctg gtgtctaaac
901 gtttcattgc acctgtcttc cgtgccacca ttaattctgt caccttctag aactgggagg
961 aaggtgggag actgataacc agctttctgc cgacctcagg acctctgggg aaaatcccac
1021 tgccgaagtg ggccttgtgg tctgatgaga agcaggccgt ccaaatgtag ataaactggt
1081 acccccccag cctcctccac tggagtacca gtcagaggct cagcttttgc tgccagcact
1141 ctgagattct tcttaaggtg aagtctttgt tcagccatca tgggcaaagc tttctagggt
1201 gactccagtt ggagccacaa catagctcat cgtttctgag ctctagttat gtgcttgcct
1261 tcatatgatt atttcattta attcctgcaa cccctctgtg aagtgggtgt agatcctact
1321 caggccagtg agggggaaag ttagggacag agagctgctg tggcttggcc aggctgacac
1381 ggttacttca gtggtgaagc taggattaga acccacatag cctgcctcta aggcctatgc
1441 agtaaagcca cagtgcgagc tgtgaagacc ccagagtcct tcaaagacca ccagtgtcaa
1501 ctgggtgggg acccctagtc ccatggacat tgtccagggt gtttgtgtag cccagccctg
1561 ggtacctggc ctccgtgaca aacatatttg caaacccagg gccattcctg cctgccgggg
1621 gatggaatgg gttaggagct ggggccaaag tagaacatct gagcacaagt cattacctcc
1681 aaggcagagg gtcctggttg gggattatgc ctagacctgt cagaatgatg tcatatgcat
1741 gctgtttgta gggaaataga ttatgctgtc agtcctgttg tgggagaggc acccaaagct
1801 ggttgttgtt attattacta ttactattga gtaacgttga agtctgtgcc aggcactatt
1861 ttaggtgcca ggaacacagc attgaactaa atataaacaa tgaaacaaaa ccctgaagct
1921 gacattcaaa tgaagaggaa acagacaata aacaaacaaa taaatataaa aaaaaaaaaa
1981 aaaaa
//