LOCUS BC018529 2569 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens leucine-rich repeats and calponin homology (CH) domain
containing 4, mRNA (cDNA clone MGC:9641 IMAGE:3918995), complete
cds.
ACCESSION BC018529
VERSION BC018529.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2569)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2569)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: c Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30181232.
FEATURES Location/Qualifiers
source 1..2569
/db_xref="H-InvDB:HIT000038359"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9641 IMAGE:3918995"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2569
/gene="LRCH4"
/gene_synonym="PP14183"
/gene_synonym="SAP25"
/db_xref="GeneID:4034"
/db_xref="HGNC:HGNC:6691"
CDS 54..2105
/gene="LRCH4"
/gene_synonym="PP14183"
/gene_synonym="SAP25"
/codon_start=1
/product="leucine-rich repeats and calponin homology (CH)
domain containing 4"
/protein_id="AAH18529.3"
/db_xref="GeneID:4034"
/db_xref="HGNC:HGNC:6691"
/translation="MAAAVAAPLAAGGEEAAATTSVPGSPGLPGRRSAERALEEAVAT
GTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNC
LRCLNPALGNLTALTYLNLSRNQLSLLPPYICQLPLRVLIVSNNKLGALPPDIGTLGS
LRQLDVSSNELQSLPSELCGLSSLRDLNVRRNQLSTLPEELGDLPLVRLDFSCNRVSR
IPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGQRGSALGDLAPSR
PPSFSPCPAEDLFPGHRYDGGLDSGFHSVDSGSKRWSGNESTDEFSELSFRISELARE
PRGPRERKEDGSADGDPVQIDFIDSHVPGEDEERGTVEEQRPPELSPGAGDRERAPSS
RREEPAGEERRRPDTLQLWQERERRQQQQSGAWGAPRKDSLLKPGLRAVVGGAAAVST
QAMHNGSPKSSASQAGAAAGQGAPAPAPASQEPLPIAGPATAPAPRPLGSIQRPNSFL
FRSSSQSGSGPSSPDSVLRPRRYPQVPDEKDLMTQLRQVLESRLQRPLPEDLAEALAS
GVILCQLANQLRPRSVPFIHVPSPAVPKLSALKARKNVESFLEACRKMGVPEADLCSP
SDLLQGTARGLRTALEAVKRVGGKALPPLWPPSGLGGFVVFYVVLMLLLYVTYTRLLG
S"
BASE COUNT 458 a 884 c 767 g 460 t
ORIGIN
1 gaaggaggga cggccggtcc cgtcagtcag gcagcgggag ccgccgggag cggatggcgg
61 cggccgtagc ggctccactc gccgccgggg gtgaggaggc ggcagccacg acctccgtgc
121 ccgggtctcc aggtctgccg gggagacgca gtgcagagcg ggccctagag gaggccgtgg
181 ccaccgggac cctgaacctg tctaaccggc gcttgaagca cttcccccgg ggcgcggccc
241 gtagctacga cctgtcagac atcacccagg ctgacctgtc ccggaaccgg tttcccgagg
301 tgcccgaggc ggcgtgccag ctggtgtccc tggagggcct gagcctctac cacaattgcc
361 tgagatgcct gaacccagcc ttggggaatc tcacagccct cacctacctc aacctcagcc
421 gaaaccagct gtcgctgctg ccaccctaca tctgccagct gcccctgagg gtcctcatcg
481 tcagcaacaa caagctggga gccctgcccc ctgacatcgg caccctggga agcctgcgac
541 agcttgacgt gagcagcaac gagctccaat ccctgccctc ggaactgtgt ggcctctctt
601 ccctgcggga cctcaatgtc cggaggaacc agctcagtac gctgcccgaa gagctggggg
661 acctccctct ggtccgcctg gatttctcct gtaaccgcgt ctcccgaatc ccagtctcct
721 tctgccgcct gaggcacctg caggtcattc tgctggacag caaccctctg cagagtccac
781 ctgcccaggt ctgcctgaag gggaaacttc acatcttcaa gtatttgtcc acagaggccg
841 ggcagcgtgg gtcggccctg ggggacctgg ccccttctcg gcccccgagt ttcagtccct
901 gccctgcaga ggatctattt ccgggacatc ggtacgatgg tgggctggac tcaggcttcc
961 acagcgttga tagtggcagc aagaggtggt ctggaaatga gtcaacagat gaattttcag
1021 agctgtcatt ccggatctca gagctggccc gggagccccg ggggcccaga gaacgcaagg
1081 aggatggctc agcggacgga gaccctgtgc agattgactt catcgacagc catgtccccg
1141 gggaggatga agagcgaggc actgtggagg agcagcgacc acccgaatta agccctgggg
1201 caggggacag ggagagggca ccaagcagca ggcgggagga gccggcaggg gaggagcggc
1261 ggcgcccgga caccttgcag ctgtggcagg agcgggaacg gcggcagcag cagcagagcg
1321 gggcgtgggg ggccccgagg aaggatagcc tcttgaagcc agggctcagg gctgttgtgg
1381 gaggggccgc cgccgtgtcc actcaagcca tgcacaacgg ctcgcctaag tccagtgcct
1441 cccaagcagg ggctgcagcg gggcagggag cccccgcccc tgcccctgcc tcccaagagc
1501 cccttcccat agctggacca gcgacagcac ctgctccacg gccacttggc tccattcaga
1561 gaccaaacag cttcctcttc cgttcctcct ctcagagtgg ctcaggccct tcctcaccag
1621 actctgtcct gagacctcgg cggtaccccc aggttccaga tgagaaggac ttaatgactc
1681 agctgcgcca ggtccttgag tcccggctgc agcggcccct gcctgaggac ctggccgagg
1741 ctctggccag tggggtcatc ctgtgccagc tggccaacca gctacggccg cgctccgtgc
1801 ccttcatcca tgtgccctcc cctgctgtgc caaaactcag tgccctcaag gctcggaaga
1861 atgtggagag ttttctagaa gcctgtcgaa aaatgggggt gcctgaggct gacctgtgct
1921 cgccctcgga tctcctccag ggcactgccc gggggctgcg gaccgcgctg gaggccgtga
1981 agcgggtggg gggcaaggcc ctaccgcccc tctggccccc ctctggtctg ggcggcttcg
2041 tcgtcttcta cgtggtcctc atgctgctgc tctatgtcac ctacactcgg ctcctgggtt
2101 cctaggcccc aaaatcggcc ctccctcacc cctttccctt cctctctatt tataaggtcc
2161 ctgctccacc cgaccccacc tgcggtgcct tcagccccaa ccaaagacac tagtgcaccc
2221 ccttcacaga cactgacctc agaggcccca ctctggtgcc cccagaccct gggcccccag
2281 cctctggcct ccctccagta gccccacgag tccccacctc tcagtgctga cggtgccttc
2341 atgtccccgc cggccctgcc cctgccctct gtaccccgtg aggggtggca ggagctggag
2401 tctccccctt cctcctgtgc cctccccttc cccccccaac agctgctatg ggggggctaa
2461 attatctcta ttttgtagag aggatctata tttgtagggg ttcggggccc aggccgggtc
2521 cctatctctg tgtataaact gtacagaccg tgaaaaaaaa aaaaaaaaa
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