LOCUS BC018302 2181 bp mRNA linear HUM 22-SEP-2005
DEFINITION Homo sapiens TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:17561 IMAGE:3463518), complete cds.
ACCESSION BC018302
VERSION BC018302.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2181)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2181)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: h Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2181
/db_xref="H-InvDB:HIT000038328"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17561 IMAGE:3463518"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2181
/gene="TRMT1"
/gene_synonym="FLJ20244"
/db_xref="GeneID:55621"
CDS 246..2138
/gene="TRMT1"
/gene_synonym="FLJ20244"
/codon_start=1
/product="TRMT1 protein"
/protein_id="AAH18302.1"
/db_xref="GeneID:55621"
/translation="MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPY
GEERPREVQETTVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGI
QIKVPGEKDTQKVVVDLSEQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGL
AASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMY
QHQRVSERFDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSK
YGAMALKSRACHEMALRIVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFTGQAK
VKASARAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPGR
FHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLS
HACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIRE
DANPSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVA
QRAARLKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAA
AGPGID"
BASE COUNT 457 a 669 c 665 g 390 t
ORIGIN
1 gggctaggca gcgcggggag ggattcggac tcggggcggg cctgcacgag ggcatcggct
61 ccacagggac cagtcatccc caaaacgagg ggatatcagc ttaccgaggc cgcaggtttt
121 cctagtccct acctcataga tatgtaggac atccccgggc ccggaatgcg gctctctgac
181 cctctctgtg ccctcccccg ccccccgaac caggcttggc gggcggaggc gccagcggat
241 gtctcatgca aggatcgtct ctgtggctaa gcctcacttt ccgctccgcc cgggtgctct
301 ctagagcccg gtttttcgag tggcagtctc cagggctgcc gaatacagca gcgatggaga
361 acggcaccgg gccctacgga gaagaacgtc cacgtgaagt ccaggagacg acagtcaccg
421 agggggctgc caaaatcgcc tttcccagtg ccaacgaggt cttttataac ccggtgcagg
481 aattcaatcg ggacctgaca tgtgctgtga tcaccgagtt tgctcgcatt cagcttgggg
541 ccaaaggaat ccagatcaag gttccaggag agaaggacac gcaaaaagtg gtcgtggact
601 tgtcagagca agaggaggaa aaggttgaac tgaaagagag tgaaaacctg gcctcaggag
661 accaacctcg cacagcggcc gtgggggaga tctgtgagga aggcctgcat gtgctggaag
721 gcctggcagc ttcaggccta cgttccattc gatttgccct agaggtgcct gggctcagat
781 ctgtggttgc aaacgatgcc tccacccggg ctgtggatct catacgccgg aatgtccagc
841 tcaatgacgt ggcccacctg gtacagccga gccaagcaga tgcccggatg ctgatgtacc
901 agcaccagag ggtgtcggag aggtttgacg tcatcgatct ggacccctat ggcagcccag
961 ccaccttcct ggatgcagct gtgcaggctg tgagtgaagg agggttgctg tgtgtgacct
1021 gcacagacat ggcggtgttg gcggggaaca gcggggagac gtgctacagc aagtacgggg
1081 ccatggccct caagagccgg gcctgccacg agatggccct gagaatcgtc ctgcacagcc
1141 tggacctccg cgccaactgc taccagcgct tcgtggtgcc gctgctcagc atcagcgctg
1201 acttctacgt gcgtgttttt gtccgtgtct tcaccggcca ggccaaggtc aaggcctcag
1261 ccagggccaa gttctctgca gcctgtggtc cccctgtgac ccccgagtgt gaacactgtg
1321 ggcaacgaca ccagcttggt ggccccatgt gggcagagcc catccatgac ctggattttg
1381 tgggccgtgt cctggaggct gtgagcgcta accccggccg cttccacacc tcggagcgga
1441 tccgaggggt cctgagcgtc atcactgagg agctcccgga cgtgcctctg tactacaccc
1501 tggaccagct gagcagcacc atccactgca acacaccaag cctcctgcag ttgcggtcgg
1561 ccctcctcca cgctgacttc cgggtctcac tctcccacgc ctgtaagaac gctgtgaaga
1621 cggatgcccc tgcctctgcc ctctgggaca tcatgcgttg ctgggagaag gaatgtccgg
1681 tgaaacggga gcgactatca gagactagcc cagcgttccg cattctcagt gtggagccca
1741 ggctgcaggc caacttcacc atccgggaag atgccaaccc cagctcccga cagcgaggac
1801 tcaagcgctt ccaggctaac ccggaggcca actggggtcc ccggcctcgt gcccggccag
1861 ggggcaaggc ggccgacgaa gctatggagg agagacgcag gctgcttcag aacaagcgga
1921 aggagccgcc ggaagatgtg gcccagcggg ctgcccggct caagacattt ccttgcaaga
1981 ggtttaagga gggcacctgt caacgcgggg accagtgctg ctactcccac agccccccga
2041 cacccagggt ttctgctgat gctgcccctg actgtccaga gacctccaac cagacccccc
2101 ctggacctgg ggctgccgct gggccaggca tagactgaac caataaagag atgtcacgtc
2161 accttcaaaa aaaaaaaaaa a
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