LOCUS BC018084 2246 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens hydroxysteroid dehydrogenase like 1, mRNA (cDNA clone
MGC:26944 IMAGE:4814348), complete cds.
ACCESSION BC018084
VERSION BC018084.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2246)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2246)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: k Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24432036.
FEATURES Location/Qualifiers
source 1..2246
/db_xref="H-InvDB:HIT000038258"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26944 IMAGE:4814348"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2246
/gene="HSDL1"
/db_xref="GeneID:83693"
/db_xref="HGNC:HGNC:16475"
CDS 178..1170
/gene="HSDL1"
/codon_start=1
/product="hydroxysteroid dehydrogenase like 1"
/protein_id="AAH18084.2"
/db_xref="GeneID:83693"
/db_xref="HGNC:HGNC:16475"
/translation="MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDF
YSLIRLHFIPRLGSRADLIKQYGRWAVVSGATDGIGKAYAEELASRGLNIILISRNEE
KLQVVAKDIADTYKVETDIIVADFSSGREIYLPIREALKDKDVGILVNNVGVFYPYPQ
YFTQLSEDKLWDIINVNIAAASLMVHVVLPGMVERKKGAIVTISSGSCCKPTPQLAAF
SASKAYLDHFSRALQYEYASKGIFVQSLIPFYVAASMTAPSNFLHRCSWLVPSPKVYA
HHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWLWVWGANILNRSLRKEALSCTA"
BASE COUNT 600 a 442 c 518 g 686 t
ORIGIN
1 acgcgggtca cgtgagggcg cggcgcggca gcagctccgg cggccgagac gggggcggcg
61 gccgcgcggg tctggcggga ccggtttgga agactttgcc ggcctgcaga ttggccttaa
121 gagaaggacg gagccacata ctgctgacgg cccagaactg gcagagagaa ggttgccatg
181 gctgctgttg acagtttcta cctcttgtac agggaaatcg ccaggtcttg caattgctat
241 atggaagctc tagctttggt tggagcctgg tatacggcca gaaaaagcat cactgtcatc
301 tgtgactttt acagcctgat caggctgcat tttatccccc gcctggggag cagagcagac
361 ttgatcaagc agtatggaag atgggccgtt gtcagcggtg caacagatgg gattggaaaa
421 gcctacgctg aagagttagc aagccgaggt ctcaatataa tcctgattag tcggaacgag
481 gagaagttgc aggttgttgc taaagacata gccgacacgt acaaagtgga aactgatatt
541 atagttgcgg acttcagcag cggtcgtgag atctaccttc caattcgaga agccctgaag
601 gacaaagacg ttggcatctt ggtaaataac gtgggtgtgt tttatcccta cccgcagtat
661 ttcactcagc tgtccgagga caagctctgg gacatcataa atgtgaacat tgccgccgct
721 agtttgatgg tccatgttgt gttaccggga atggtggaga gaaagaaagg tgccatcgtc
781 acgatctctt ctggctcctg ctgcaaaccc actcctcagc tggctgcatt ttctgcttct
841 aaggcttatt tagaccactt cagcagagcc ttgcaatatg aatatgcctc taaaggaatc
901 tttgtacaga gtctaatccc tttctatgta gccgccagca tgacagcacc cagcaacttt
961 ctgcacaggt gctcgtggtt ggtgccttcg ccaaaagtct atgcacatca tgctgtttct
1021 actcttggga tttccaaaag gaccacagga tattggtccc attctattca gtttcttttt
1081 gcacagtata tgcctgaatg gctctgggtg tggggagcaa atattctcaa ccgttcacta
1141 cgtaaggaag ccttatcctg cacagcctga gtctggatgg ccacttgaga agttttgcca
1201 actcctggga acctcgatat tctgacattt ggaaaaacac atttaattta tctcctgtgt
1261 ttcattgctg attattcagc atactgttga ttcgtcattt gcaaaacaca cataataccg
1321 tcagagtgct gtgaaaaacc ttaagggtgt gtggatggca caggatcaat aatgcctgag
1381 gctgattgac gacatctaca tttcagtgct ttttccctaa gctgtttgaa agttacgctt
1441 ttctgttgtt ctagagccac agcagtctaa tattgaaata taatatgatt tgtcaggtct
1501 tataatttca gatgttgttt tttaagggaa attgaccatt tcactagagg agttgtgctg
1561 gtttttaaat gtgcatcaag aaagactact gaaaagtatt attttgtaac taagattgct
1621 ggtactatta ggaaaaatct gtgtgtattg tatagctcta gctgtttgac tatctgtaat
1681 gaaaatgctg cacttcaact ggtatttcat tagagaaccg tgtgtgtgcg tgtgtgtggt
1741 gcctttgagc aactttattt atggttacca tatttttaaa aagatttttt gtcagggtga
1801 cttaacatgg actcttatag ggtattaaaa caatctagat tattcctttt catcctaaat
1861 aagcctacca aatttcatgc tgttggtttg ccatgaatga tattacttcc tacattatat
1921 ttgtgttttt tcaaatctgc tatggaatga acttattcct agatttggat atgtaagaga
1981 aacctgcagt catcttttga tttataaggc aattcttgtg gataaatagt gatttctcag
2041 cctctgaccc attttataac tgaaatttag ccctttagag cttgttatat ctggttttcc
2101 tacgtttttc tatgtaatat tattccattc cagtagcatt attgatagaa atagtaagta
2161 tttatggaat agtaaaatat ggacaaatta cgtgtgtgac atatctgtca atataagtta
2221 gaagcttaaa aaaaaaaaaa aaaaaa
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