LOCUS BC017863 1044 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, C, mRNA
(cDNA clone IMAGE:4695712), complete cds.
ACCESSION BC017863
VERSION BC017863.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1044)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1044)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: n Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18641346
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1044
/db_xref="H-InvDB:HIT000089440"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4695712"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1044
/gene="PTPRC"
/gene_synonym="B220"
/gene_synonym="GP180"
/gene_synonym="LCA"
/gene_synonym="LY5"
/gene_synonym="T200"
/db_xref="GeneID:5788"
/db_xref="HGNC:HGNC:9666"
/db_xref="MIM:151460"
CDS 92..196
/gene="PTPRC"
/gene_synonym="B220"
/gene_synonym="GP180"
/gene_synonym="LCA"
/gene_synonym="LY5"
/gene_synonym="T200"
/codon_start=1
/product="protein tyrosine phosphatase, receptor type, C"
/protein_id="AAH17863.1"
/db_xref="GeneID:5788"
/db_xref="HGNC:HGNC:9666"
/db_xref="MIM:151460"
/translation="MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGKN"
BASE COUNT 387 a 144 c 147 g 366 t
ORIGIN
1 gaggaggaaa ttgttcctcg tctgataaga caacagtgga gaaaggacgc atgctgtttc
61 ttagggacac ggctgacttc cagatatgac catgtatttg tggcttaaac tcttggcatt
121 tggctttgcc tttctggaca cagaagtatt tgtgacaggg caaagcccaa caccttcccc
181 cactggtaag aattaatatt tatattttta ctaattttat tttcttgttg caaagtttat
241 atatttaact acaattttct attattaaca ctgaaattat ttttaaggat aaattttata
301 atcatgagtg attcttgaca ttcacttgtt cttaaacttt ctgcttatac gttatagagt
361 ttaataacta cctaaacatg ttattaaatt tgtatatata ttttgtgtat aaatagtaac
421 ttttcccaaa cttgacagta aatcacacaa caggtttcta ctctctttta atattttaag
481 actataaaaa aatgcattta aattagataa caaaatttta tagtctgaaa gcaggttaac
541 agctgtctat gtatgttata gatatgtaga taacagattt gcatatgtct atatttcttt
601 aagagtatgt tgcttttttc agtggtatgc aaaacctttg agactattga gatattttta
661 aataataatt ttcaaattct actgaacact tcaatagtcc ttataaatgt cttaatcatg
721 agataaattt aaaacacaga gatgctgcaa ataaattcat acatagtaca tacaaaataa
781 gagaaaaaat taaattgcag atggttaaat atcacatcac ttaactgatg ttactgaaaa
841 tgtattttcc tgcataatca tatggttgac agtatgcatt aagaaggtaa gtaaaacaat
901 gaagacaatt ttgatttaat atggtaatgc acaattccaa ctaacgtaca ttcaacagat
961 catgaaattg ggttattaaa atgaatattt ttgtcattaa ataaaaattc cgtccaaaaa
1021 aaaaaaaaaa aaaaaaaaaa aaaa
//