LOCUS BC017734 1992 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sec1 family domain containing 1, mRNA (cDNA clone
MGC:21568 IMAGE:4420306), complete cds.
ACCESSION BC017734
VERSION BC017734.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1992)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1992)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: j Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33469965.
FEATURES Location/Qualifiers
source 1..1992
/db_xref="H-InvDB:HIT000038112"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21568 IMAGE:4420306"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1992
/gene="SCFD1"
/gene_synonym="KIAA0917"
/gene_synonym="RA410"
/gene_synonym="SLY1"
/gene_synonym="STXBP1L2"
/db_xref="GeneID:23256"
/db_xref="HGNC:HGNC:20726"
CDS 1..1929
/gene="SCFD1"
/gene_synonym="KIAA0917"
/gene_synonym="RA410"
/gene_synonym="SLY1"
/gene_synonym="STXBP1L2"
/codon_start=1
/product="sec1 family domain containing 1"
/protein_id="AAH17734.1"
/db_xref="GeneID:23256"
/db_xref="HGNC:HGNC:20726"
/translation="MAAAAAATAAAAASIRERQTVALKRMLNFNVPHIKNSTGEPVWK
VLIYDRFGQDIISPLLSVRELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRM
CQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDM
FVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAA
EMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWT
YQALVHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPF
PEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPEL
LEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTP
EDKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFTKMASAPAS
YGSTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDY
RYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCS
ELFNATQFIKQLSQLGQK"
BASE COUNT 681 a 359 c 413 g 539 t
ORIGIN
1 atggcggcgg cggcggcagc gacagcagca gcagcagcca gtattcggga aaggcagaca
61 gtggctttga agcgtatgtt gaatttcaat gtgcctcata ttaaaaacag cacaggagaa
121 ccagtatgga aggtactcat ttatgacaga tttggccaag atataatctc tcctctgcta
181 tctgtgaggg agctaagaga catgggaatc actctgcatc tgcttttaca ctctgatcga
241 gatcctattc cagatgttcc tgcagtatac tttgtaatgc caactgaaga aaatattgac
301 agaatgtgcc aggatcttcg aaatcaacta tatgaatcat attatttaaa ttttatttct
361 gctatttcaa gaagtaaact ggaagatatt gcaaatgcag cgttagcagc tagtgcagta
421 acacaagtag ccaaggtttt tgaccaatat ctcaatttta ttactttgga agatgatatg
481 tttgtattat gtaatcaaaa taaggagctt gtttcatatc gtgccattaa caggccagat
541 atcacagaca cggaaatgga aactgttatg gacactatag ttgacagcct cttctgcttt
601 tttgttactc tgggtgctgt tcctataatc agatgttcaa gaggaacagc agcagaaatg
661 gtagcagtga aactagacaa gaaacttcga gaaaatctaa gagatgcaag aaacagtctt
721 tttacaggtg atacacttgg agctggccaa ttcagcttcc agaggccctt attagtcctt
781 gttgacagaa acatagattt ggcaactcct ttacatcata cttggacata tcaagcattg
841 gtgcacgatg tactggattt ccatttaaac agggttaatt tggaagaatc ttcaggagtg
901 gaaaactctc cagctggtgc tagaccaaag agaaaaaaca agaagtctta tgatttaact
961 ccggttgata aattttggca aaaacataaa ggaagtccat tcccagaagt tgcagaatca
1021 gttcagcaag aactagaatc ttacagagca caggaagatg aggtcaaacg acttaaaagc
1081 attatgggac tagaagggga agatgaagga gccataagta tgctttctga caataccgct
1141 aagctaacat cagctgttag ttctttgcca gaactccttg agaaaaaaag acttattgat
1201 ctccatacaa atgttgccac tgctgtttta gaacatataa aggcaagaaa attggatgta
1261 tattttgaat atgaagaaaa aataatgagc aaaactactc tggataaatc tcttctagat
1321 ataatatcag accctgatgc aggaactcca gaagataaaa tgaggttgtt tcttatctat
1381 tatataagca cacagcaagc accttctgag gctgatttgg agcaatataa aaaagcttta
1441 actgatgcag gatgcaacct taatccttta caatatatca aacagtggaa ggcttttacc
1501 aagatggcct cagctccggc cagctatggc agcactacca ctaaaccaat gggtctttta
1561 tcacgagtca tgaatacagg atcacagttt gtgatggaag gagtgaagaa cctggttttg
1621 aaacagcaaa atctacctgt tactcgtatt ttggacaatc ttatggagat gaagtcaaac
1681 cccgaaactg atgactatag atattttgat cccaaaatgc tgcggggcaa tgacagctca
1741 gttcccagaa ataaaaatcc attccaagag gccattgttt ttgtggtggg aggaggcaac
1801 tacattgaat atcagaatct tgttgactac ataaagggga aacaaggcaa acacatttta
1861 tatggctgca gtgagctttt taatgctaca cagttcataa aacagttgtc acaacttgga
1921 caaaagtaac acagaagaac cttactatga taatctactt ggaatgtgga taaatgtaaa
1981 aaaaaaaaaa aa
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