LOCUS BC017570 1797 bp mRNA linear HUM 08-DEC-2006
DEFINITION Homo sapiens chromosome 9 open reading frame 78, mRNA (cDNA clone
MGC:23765 IMAGE:4109447), complete cds.
ACCESSION BC017570
VERSION BC017570.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1797)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1797)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 32 Row: a Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1797
/db_xref="H-InvDB:HIT000038055"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23765 IMAGE:4109447"
/tissue_type="Bone marrow, acute myelogenous leukemia"
/clone_lib="NIH_MGC_55"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1797
/gene="C9orf78"
/gene_synonym="bA409K20.3"
/gene_synonym="HSPC220"
/db_xref="GeneID:51759"
/db_xref="HGNC:HGNC:24932"
CDS 30..899
/gene="C9orf78"
/gene_synonym="bA409K20.3"
/gene_synonym="HSPC220"
/codon_start=1
/product="chromosome 9 open reading frame 78"
/protein_id="AAH17570.1"
/db_xref="GeneID:51759"
/db_xref="HGNC:HGNC:24932"
/translation="MPVVRKIFRRRRGDSESEEDEQDSEEVRLKLEETREVQNLRKRP
NGVSAVALLVGEKVQEETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSF
SAETNRRDEDADMMKYIETELKKRKGIVEHEEQKVKSKNAEDCLYELPENIRVSSAKK
TEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQSKKKDSETSFVPTNMA
VNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDD
YHYEKFKKMNRRY"
BASE COUNT 564 a 354 c 466 g 413 t
ORIGIN
1 gggggctgta caactcggcc gttgtcacca tgccggtcgt ccggaagatt ttccgtcgcc
61 gccggggtga ctcggagtca gaggaagatg agcaggactc agaggaggtt cgattaaaac
121 tggaagagac cagagaggta cagaacttga ggaagaggcc caacggggtg agtgctgtgg
181 ccttgctggt gggagagaag gtacaagagg agaccactct agtggatgat ccctttcaga
241 tgaagacagg tggtatggtg gatatgaaga aactgaagga aaggggcaaa gataagatca
301 gtgaggagga ggacctgcac ctggggacat cgttttctgc agaaaccaac cgaagggatg
361 aggatgcaga catgatgaag tacattgaga cagagctaaa gaagaggaaa gggatcgtgg
421 aacatgagga acagaaagtt aagtcaaaga atgcagagga ctgtctttat gaacttccag
481 aaaacatccg tgtttcctca gcaaagaaga ccgaggagat gctttccaac cagatgctga
541 gtggcattcc tgaggtggac ctgggcatcg atgctaaaat aaaaaatatc atttccacgg
601 aggatgccaa ggcccgtctg ctggcagagc agcagagcaa gaagaaagac agcgagacct
661 ccttcgtgcc taccaacatg gctgtgaatt atgtgcagca caacagattt tatcatgagg
721 agctcaacgc gcccatacgg agaaacaaag aagagcccaa ggcccggccc ttgagagtag
781 gtgacacgga gaagccagag cctgagcggt cccctcctaa ccgcaagcgt cctgctaacg
841 agaaggcaac tgatgactat cattatgaga agttcaagaa aatgaatagg cggtactgag
901 ttgtgcagag tgggatgtaa atatcgcctt cctctcccta tatccctccc atgaaaaatg
961 gcttcctggc cgggcgtggt ggctcctgcc tgtaatccca gcactttggg aggccgaggt
1021 gggcggatca cctgaggtcg ggagtttgag accagcctga ccaacatgga gaaacccagt
1081 ctctactgaa aatacagaaa agttagccag gcgtggtggc acatgcctgt aatcccagct
1141 gctcaggagg ctgaggcagg agaattgctt gaacccaaga ggcggaggtt gtggtgagcc
1201 gagattgcac ctttgtactc cagcctgggc aacgagcaaa aaactctgtc tcaaaaaaaa
1261 aaaaaaaaaa agaaagaaaa agaaaaatgg cttccaggac agagcatgct catttgctgg
1321 cggacagttc cagaaacaga ccctgttagt ccttctactt acctgctgga tttttcaagc
1381 actaaattta taactttttg aaacaaaata atgtgtaatt ttccatttgg gggcaaactc
1441 tattcttgtg agcattatta aatcttgttt gtaaatatat tgtctttctc ttaatatttg
1501 ctctgggtca ggaagaagct gttcacggtg tgataatact ctttagattg tgctttcatt
1561 attatagatg catcatgtct tctgctttca cgtgtctggg atggggtcag aaatgcatcc
1621 tccagctgac agaaaaatcc aggatgagat cagaaggata ctggtgtttt ctgactttta
1681 caaaattact tgtttgtttt cattaaaaaa aaagcataaa ctatgtttct tattactatt
1741 agaattatta aatttcaaaa tgaatctaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
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