LOCUS BC017503 2713 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cerebellar degeneration-related protein 2, 62kDa, mRNA
(cDNA clone MGC:23119 IMAGE:4873337), complete cds.
ACCESSION BC017503
VERSION BC017503.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2713)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2713)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: m Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55770831.
FEATURES Location/Qualifiers
source 1..2713
/db_xref="H-InvDB:HIT000038040"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23119 IMAGE:4873337"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2713
/gene="CDR2"
/gene_synonym="CDR62"
/gene_synonym="Yo"
/db_xref="GeneID:1039"
/db_xref="HGNC:HGNC:1799"
/db_xref="MIM:117340"
CDS 291..1655
/gene="CDR2"
/gene_synonym="CDR62"
/gene_synonym="Yo"
/codon_start=1
/product="cerebellar degeneration-related protein 2,
62kDa"
/protein_id="AAH17503.2"
/db_xref="GeneID:1039"
/db_xref="HGNC:HGNC:1799"
/db_xref="MIM:117340"
/translation="MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTE
LEDSVQQMYTTNQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLV
ADSKASQQKILSLTETIECLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFAC
LKELYDLRQHFVYDHVFAEKITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVT
MEEEYGLVLKENSELEQQLGATGAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVP
DSLYVPFKEPSQSLLEEMFLTVPESHRKPLKRSSSETILSSLAGSDIVKGHEETCIRR
AKAVKQRGISLLHEVDTQYSALKVKYEELLKKCQEEQDSLSHKAVQTSRAAAKDLTGV
NAQSEPVASGWELASVNPEPVSSPTTPPEYKALFKEIFSCIKKTKQEIDEQRTKYRSL
SSHS"
BASE COUNT 771 a 620 c 722 g 600 t
ORIGIN
1 gcccggcggc ggcgtgaaga ctggcggctg cgtgagactc cggctccagg cgttcgcacc
61 gtaatgcccg gccgttgggg ccgtcggtag gcgcgaggcg agtcgaggca gccggccggt
121 cggcggccgc cggcgggaac ggggctgagg cggcgcagcg gagtctgggc ggcggcgcgt
181 cccgcccgag ggcggctctg gctgagggcg gaggggccgg ggaagagccc ggggcagcgg
241 ctgaggcggg acggcggcgg gggccgctgc ccctagaaga cccagccgag atgctggcgg
301 aaaacctggt agaggagttt gagatgaagg aggacgagcc gtggtacgac caccaggacc
361 tccagcaaga tcttcaactt gctgctgagc ttgggaagac attactggat cggaacacag
421 agttggagga ctctgttcag cagatgtata caaccaatca ggagcagtta caggaaattg
481 agtatctgac gaagcaagtg gaacttctac ggcagatgaa cgaacaacat gcaaaggttt
541 atgaacaatt agacgtcaca gcaagggaac tggaagaaac aaatcaaaag ctagttgctg
601 acagcaaggc ctcacagcaa aagattctga gcctgactga aacgattgaa tgcctgcaaa
661 ccaacattga tcacctccag agccaagtgg aggagctgaa gtcatctggc caagggagaa
721 ggagcccggg aaagtgtgac caggagaaac cggcacccag ctttgcatgt ctgaaggagc
781 tgtatgacct ccgccaacac ttcgtgtatg atcatgtgtt cgctgagaag atcacttcct
841 tgcaaggtca gccaagccct gatgaagagg aaaatgagca cttgaaaaaa acagtgacaa
901 tgttgcaggc ccagctgagc ctggagcggc agaagcgggt gactatggag gaggaatatg
961 ggctcgtgtt aaaggagaac agtgaactgg agcagcagct gggggccaca ggtgcctacc
1021 gagcacgggc gctggaacta gaggccgagg tggcagagat gcgacagatg ttgcagtcag
1081 agcatccatt tgtgaatgga gttgagaagc tggtgccaga ctctctgtat gttcctttca
1141 aagagcccag ccagagcctg ctggaagaga tgttcctgac tgtgccggaa tcacatagaa
1201 agcctctcaa gcgcagcagc agtgagacga tcctcagcag cttggcaggg agtgacatcg
1261 tgaagggcca cgaggagacc tgcatcagga gggccaaggc tgtgaaacag aggggcatct
1321 cccttctgca cgaagtggac acgcagtaca gcgccctgaa ggtgaagtat gaagagttgc
1381 tgaagaagtg ccaagaggaa caggactccc tgtcacacaa ggctgtgcag acctccaggg
1441 ctgcagccaa ggacctgact ggagtgaacg cccagtctga gcctgttgcc agcggctggg
1501 aactggcctc tgtcaaccca gagcccgtga gttcccctac aacacctcca gaatacaaag
1561 cgttgtttaa ggagatcttt agttgcatca agaaaactaa gcaggaaata gatgaacaga
1621 gaacaaaata ccgatcactc tcctctcatt cttaattgaa cctctagctc tactactaat
1681 ttgcctattg cctatcgcct ctctctccca ttcagacaag tgtttgtaga ctctgaagcc
1741 taatgttact catgacgttt gcctcattgc tttgcttatt tagcaaatgc atacaacgag
1801 gaaaggaggt ggctagtggt atcagttctc tgatccactt ccatttaagc tccccaggaa
1861 atcccatgac aaactggcct ctggctggcg cgctgattag acttcagttc ctgaaaagga
1921 ccagtggagg gaagagctat acttctggag aagtaggcct ggagttacta cagtatgggg
1981 gaaaagggtc gagttagaac aaagctaagg caattcctat tgcttccttg cgcaacttct
2041 caaaacgatg aaagtcagaa ggctgtcaaa ctcaaatatc tttgcaaaca ctgtttgaat
2101 actgtgaatt cattacgaag aatgttcgag agaaagcagg ggtctaatcc aaaagaaatg
2161 tcattaacca atactccaag tccttgagtt ttgttatatc tgaactagtt gaactgtgac
2221 tgacaggtaa tcttaatata tccaaatcca actgaatacc aaattgagat ggcaaatttt
2281 tgtttgatat aagttagctt gttagcatat gccctagagg gcctccatcc ctgtattcta
2341 atgtttttac tcaaagctct agcctttagg ataggtgaat atgtaaatct tttatcactt
2401 tctcaaattc aaactaaagg ggaaagatca aaccccttcc cttcctacct gttttctgag
2461 ctggctgact tgccagccac aagctgctct tgcagagttc ttaccattcc tgtaaatgtt
2521 ttgacttgtt gcagaaattc ctatctactt tattaagcag tattgatctg actgtggaaa
2581 catcctctca cttgcattct tttaacttaa aactatttaa gaactgatgt tccgattatt
2641 gtatatattt ttctaaaaac caaataaagc tacctatgaa aatgaaaaaa aaaaaaaaaa
2701 aaaaaaaaaa aaa
//