LOCUS BC017482 1792 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens hippocalcin-like 1, mRNA (cDNA clone MGC:15798
IMAGE:3504942), complete cds.
ACCESSION BC017482
VERSION BC017482.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1792)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1792)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: c Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19913440.
FEATURES Location/Qualifiers
source 1..1792
/db_xref="H-InvDB:HIT000038029"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15798 IMAGE:3504942"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1792
/gene="HPCAL1"
/gene_synonym="BDR1"
/gene_synonym="HLP2"
/gene_synonym="VILIP-3"
/db_xref="GeneID:3241"
/db_xref="HGNC:HGNC:5145"
/db_xref="MIM:600207"
CDS 375..956
/gene="HPCAL1"
/gene_synonym="BDR1"
/gene_synonym="HLP2"
/gene_synonym="VILIP-3"
/codon_start=1
/product="hippocalcin-like 1"
/protein_id="AAH17482.1"
/db_xref="GeneID:3241"
/db_xref="HGNC:HGNC:5145"
/db_xref="MIM:600207"
/translation="MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLT
VDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLK
WAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNN
DGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQF"
BASE COUNT 357 a 555 c 528 g 352 t
ORIGIN
1 cggcggcggc gggcagcgga cgggcggact gacgggcgcc tccaccttgc tccctccctg
61 gctgccggct tccttttgtc tttctgggcg gcgatgagcg cagggccggc gcagcagctg
121 cgggcgcacg gaggcccgcg ctgctagtca ctcctcccgg cctcggcgcg cttgtcccgg
181 gcagcggccc gggcccgctg cagccgccgc cggcgccgaa cttgggctcg ggaagccggc
241 ggaccgcgtc ctgcgccgga gcaggggcat ggtctagtgg cccagtcagg acgcggaaac
301 actccctgga ggttctgacc cactccctct cagcctccgc ctggtctctg gtgtagtcgc
361 cgccgccagc cgccatgggc aaacagaaca gcaagctgcg gcccgaggtg ctgcaggacc
421 tgcgggagaa cacggagttc accgaccacg agctgcagga gtggtacaag ggcttcctca
481 aggactgccc caccggccac ctgaccgtgg acgagttcaa gaagatctac gccaacttct
541 tcccctacgg cgacgcttcc aagttcgccg agcacgtctt ccgcaccttc gacaccaacg
601 gcgacggcac catcgacttc cgggagttca tcattgcgct gagcgtgacc tcgcggggca
661 agctggagca gaagctcaag tgggccttca gcatgtacga cctggacggc aacggctaca
721 tcagccgcag cgagatgctg gagatcgtgc aggccatcta caagatggtg tcgtctgtga
781 tgaagatgcc ggaggatgag tccaccccgg agaagcgcac agacaagatc ttcaggcaga
841 tggacaccaa caatgacggc aaactgtcct tggaagaatt catcagaggt gccaagagcg
901 acccctccat cgtccgcctg ctgcagtgcg accccagcag tgccagtcag ttctgagcga
961 gcggcccctg gacagttgca gagaaacaca ggcttgtcgt gccgtttaag ctttgcttgc
1021 aagagtggat gccccgcaat cgttcctgct ctcccgggcc ccgggcctgg ggcatgcgtt
1081 gcacctgccc ggcccggtgg ctgcgcctcc ctcctccacc tgaccaacgc gacattcctc
1141 ccctcacgcc tggcccggtc ccttccaggg caactcccag ggatgtggtg acatgcaggg
1201 ttcaagtgtt cttggttcca ggcacctccc ggctcacggg gagctcagag gtccatgccg
1261 aggagaccag gcaggacctc ccgaggctgc gccccggccg gcccatgcgt tttgtgatcc
1321 caagtgactc tgtgggaagg gtggggacga ggcgtcggga gggtatacag ggagcccctc
1381 ccgtgcatgg ctgccccccc gttcattttc tccaccacag ccgcttgcac gtatagatac
1441 tgtggtcccc tttcttttaa tatataaatt atgtatggtg aagtggagtg tattgtgtag
1501 gtcccgtatt taatgcctct gactgccttt gaagcgcagc cctctgtggc ccgcagcccc
1561 ctgagcctgg ctgttgtgtg gtatttatgc tctctttgtc tgcctgtttc taaggaaatg
1621 catgtgtgcc ctgagccgtg atgatcctcc catccgtgtt gtgagcacag gcatttgtgt
1681 ctggtctgtc ctccctgttg attggtctgg catttccggt attaaaatga taaaataaat
1741 ggcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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