LOCUS BC017475 1583 bp mRNA linear HUM 04-JUN-2004
DEFINITION Homo sapiens tetratricopeptide repeat domain 15, mRNA (cDNA clone
IMAGE:3533119), partial cds.
ACCESSION BC017475
VERSION BC017475.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1583)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1583)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: i Column: 6.
FEATURES Location/Qualifiers
source 1..1583
/db_xref="H-InvDB:HIT000038024"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3533119"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1583
/gene="TTC15"
/gene_synonym="CGI-87"
/db_xref="GeneID:51112"
CDS <1..1412
/gene="TTC15"
/gene_synonym="CGI-87"
/codon_start=3
/product="TTC15 protein"
/protein_id="AAH17475.2"
/db_xref="GeneID:51112"
/translation="GPQAAAPPASPEPFAHIQAVFAGSDDPFATALSMSEMDRRNDAW
LPGEATRGVLRAVATQQRGAVFVDKENLTMPGLRFDNIQGDAVKDLMLRFLGEKAAAK
RQVLNADSVEQSFVGLKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQ
LWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILH
AELQQYLGNPQESLDRLHKVKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRS
RLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAE
KYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN
NAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQALL
EAVAGKEGDSFNTQCLKLA"
BASE COUNT 438 a 412 c 435 g 298 t
ORIGIN
1 gagggcccca ggcagctgcg cccccggcgt cgccagagcc tttcgcgcac atccaggcag
61 tgtttgcagg gagtgacgac ccctttgcca ccgccctgag catgagcgag atggaccgga
121 ggaacgacgc ctggcttccc ggcgaggcta cgcgtggagt cctgcgggcc gtggccaccc
181 agcagcgcgg cgccgtgttc gtggacaagg agaacctcac catgccgggc ctcaggttcg
241 acaacatcca gggagatgca gttaaagact tgatgcttcg ctttctgggt gaaaaagctg
301 cagcaaagag acaagtccta aatgccgact cagtggaaca atcttttgtt ggattgaaac
361 agctaatcag ctgcagaaac tggagggcag cagtggacct gtgcggacgt ctcctcacag
421 cccacggcca gggctacggc aagagcgggc tgctcaccag ccacacgaca gattcactgc
481 agctctggtt tgtcaggctg gcactactag tgaagttggg ccttttccag aatgctgaga
541 tggaatttga acccttcgga aatcttgatc agccagatct ttattacgag tactacccgc
601 acgtgtaccc tgggcgcagg ggctccatgg tccccttctc gatgcgcatc ttgcacgcgg
661 agcttcagca gtacctgggg aacccacagg agtcgctgga tagactgcac aaggtgaaga
721 ctgtctgcag caagatcctg gccaatttgg agcaaggctt agcagaagac ggcggcatga
781 gcagcgtgac tcaggagggc agacaagcct ctatccggct gtggaggtca cgtctgggcc
841 gggtgatgta ctccatggca aactgtctgc tcctgatgaa ggattatgtg ctggccgtgg
901 aggcgtatca ttcggttatc aagtattacc cagagcaaga gccccagctg ctcagcggca
961 tcggccggat ttccctgcag attggagaca taaaaacagc tgaaaagtat tttcaagacg
1021 ttgagaaagt aacacagaaa ttagacggac tacagggtaa aatcatggtt ttgatgaaca
1081 gcgcgttcct tcacctcggg cagaataact ttgcagaagc ccacaggttc ttcacagaga
1141 tcttaaggat ggatccaaga aacgcagtgg ccaacaacaa cgctgccgtg tgtctgctct
1201 acctgggcaa gctcaaggac tccctgcggc agctggaggc catggtccag caggacccca
1261 ggcactacct gcacgagagc gtgctcttca acctgaccac catgtacgag ctggagtcct
1321 cacggagcat gcagaagaaa caggccctgc tggaggctgt cgccggcaag gagggggaca
1381 gcttcaacac acagtgcctc aagctggcct agctgcctcc aacacactac gtcagaagga
1441 cccgggtctt tgaaactgtg tcttgaagct aatgtattaa tgtgacatgg aggaactcaa
1501 taaaactcct gcttcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaa
//