LOCUS BC017348 2445 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member
9, mRNA (cDNA clone MGC:29663 IMAGE:5014247), complete cds.
ACCESSION BC017348
VERSION BC017348.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2445)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2445)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC017348.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: l Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2445
/db_xref="H-InvDB:HIT000037958"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29663 IMAGE:5014247"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..2445
/gene="ABCB9"
/gene_synonym="EST122234"
/gene_synonym="KIAA1520"
/gene_synonym="TAPL"
/db_xref="GeneID:23457"
/db_xref="MIM:605453"
CDS 26..1816
/gene="ABCB9"
/gene_synonym="EST122234"
/gene_synonym="KIAA1520"
/gene_synonym="TAPL"
/codon_start=1
/product="ABCB9 protein"
/protein_id="AAH17348.1"
/db_xref="GeneID:23457"
/db_xref="MIM:605453"
/translation="MRLWKAVVVTLAFMSVDICVTTAIYVFSHLDRSLLEDIRHFNIF
DSVLDLWAACLYRSCLLLGATIGVAKNSALGPRRLRASWLVITLVCLFVGIYAMVKLL
LFSEVRRPIRDPWFWALFVWTYISLGASFLLWWLLSTVRPGTQALEPGAATEAEGFPG
SGRPPPEQASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVI
QKSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNCLFRSLVSQETSF
FDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFMFSLSWQLSLVTFM
GFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETISAMKTVRSFANEEEEAEVYL
RKLQQVYKLNRKEAAAYMYYVWGSGLTLLVVQVSILYYGGHLVISGQMTSGNLIAFII
YEFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPTMVHDGSLAPDHLEGRVDFEN
VTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLEGGRVLLD
GKPISAYDHKYLHRVVCARAWATLLRPFCI"
misc_feature 587..1378
/gene="ABCB9"
/gene_synonym="EST122234"
/gene_synonym="KIAA1520"
/gene_synonym="TAPL"
/note="ABC_membrane; Region: ABC transporter transmembrane
region. This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions"
/db_xref="CDD:pfam00664"
misc_feature 1535..1771
/gene="ABCB9"
/gene_synonym="EST122234"
/gene_synonym="KIAA1520"
/gene_synonym="TAPL"
/note="ABC_ATPase; Region: ABC (ATP-binding cassette)
transporter nucleotide-binding domain"
/db_xref="CDD:cd00267"
BASE COUNT 512 a 727 c 694 g 512 t
ORIGIN
1 cacccgccca cctccaacca gcaggatgcg gctgtggaag gcggtggtgg tgactttggc
61 cttcatgagt gtggacatct gcgtgaccac ggccatctat gtcttcagcc acctggaccg
121 cagcctcctg gaggacatcc gccacttcaa catctttgac tcggtgctgg atctctgggc
181 agcctgcctg taccgcagct gcctgctgct gggagccacc attggtgtgg ccaagaacag
241 tgcgctgggg ccccggcggc tgcgggcctc gtggctggtc atcaccctcg tgtgcctctt
301 cgtgggcatc tatgccatgg tgaagctgct gctcttctca gaggtgcgca ggcccatccg
361 ggacccctgg ttttgggccc tgttcgtgtg gacgtacatt tcactcggcg catccttcct
421 gctctggtgg ctgctgtcca ccgtgcggcc aggcacccag gccctggagc caggggcggc
481 caccgaggct gagggcttcc ctgggagcgg ccggccaccg cccgagcagg cgtctggggc
541 cacgctgcag aagctgctct cctacaccaa gcccgacgtg gccttcctcg tggccgcctc
601 cttcttcctc atcgtggcag ctctgggaga gaccttcctg ccctactaca cgggccgcgc
661 cattgatggc atcgtcatcc agaaaagcat ggatcagttc agcacggctg tcgtcatcgt
721 gtgcctgctg gccattggca gctcatttgc cgcaggtatt cggggcggca tttttaccct
781 catatttgcc agactgaaca ttcgccttcg aaactgtctc ttccgctcac tggtgtccca
841 ggagacaagc ttctttgatg agaaccgcac aggggacctc atctcccgcc tgacctcgga
901 caccaccatg gtcagcgacc tggtctccca gaacatcaat gtcttcctgc ggaacacagt
961 caaggtcacg ggcgtggtgg tcttcatgtt cagcctctca tggcagctct ccttggtcac
1021 cttcatgggc ttccccatca tcatgatggt gtccaacatc tacggcaagt actacaagag
1081 gctctccaaa gaggtccaga atgccctggc cagagcgagc aacacggcgg aggagaccat
1141 cagtgccatg aagactgtcc ggagcttcgc caatgaggag gaggaggcag aggtgtacct
1201 gcggaagctg cagcaggtgt acaagctgaa caggaaggag gcagctgcct acatgtacta
1261 cgtctggggc agcgggctca cactgctggt ggtccaggtc agcatcctct actacggggg
1321 ccaccttgtc atctcaggcc agatgaccag cggcaacctc atcgccttca tcatctacga
1381 gtttgtcctg ggagattgta tggagtccgt gggctccgtc tacagtggcc tgatgcaggg
1441 agtgggggct gctgagaagg tgttcgagtt catcgaccgg cagccgacca tggtgcacga
1501 tggcagcttg gcccccgacc acctggaggg ccgggtggac tttgagaatg tgaccttcac
1561 ctaccgcact cggccccaca cccaggtcct gcagaatgtc tccttcagcc tgtcccccgg
1621 caaggtgacg gccctggtgg ggccctcggg cagtgggaag agctcctgtg tcaacatcct
1681 ggagaacttc taccccctgg aggggggccg ggtgctgctg gacggcaagc ccatcagcgc
1741 ctacgaccac aagtacttgc accgtgtggt atgtgcacgg gcctgggcca cacttctccg
1801 ccctttctgc atctaaccgt ctttcttgtg agctgtaaca ggtgcggaag agggcactag
1861 agataaatgg acagttcaaa gaattatcac caattacaat gccctcctag agaaacagaa
1921 cattcttgtc cagacgtggt ggctcacacc tgtaatccca gcattttggg aagctgaggc
1981 tggaggatcc cttgaggcca gcctggacaa catagtgaga ctccgtctct attaaaaaag
2041 aaaaaaaggg cagatgtgat ggcccacgcc tgtaatccca gcactttggg aggccaaggc
2101 aggtggactg cttgagctca ggagttcaag accagcatgg ccaacatggc gaaaccccat
2161 ctctactaaa aatacagaaa ttggccgggt gtggtggcac atgcctgtaa tctcagctcc
2221 tcgggaggct gaggcacgag aatcacttga acccgggagg tagaggttgc agtgagccga
2281 gactgggcca ctgcactgca gcctgggcaa cagaataaga ctctgtctca tgaaaaaaaa
2341 gaaatagaac attctggcac tccagaagcc tcctaccccc cgccatgtgt cccttctctt
2401 tccccaagaa gtaatgtgtt gacttttaaa aaaaaaaaaa aaaaa
//