LOCUS BC017308 1384 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:29672
IMAGE:5089022), complete cds.
ACCESSION BC017308
VERSION BC017308.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1384)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1384)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC017308.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: o Column: 16.
FEATURES Location/Qualifiers
source 1..1384
/db_xref="H-InvDB:HIT000037936"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29672 IMAGE:5089022"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1384
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
CDS 45..851
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/codon_start=1
/product="calpain, small subunit 1"
/protein_id="AAH17308.1"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
/translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG
GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR
RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS"
BASE COUNT 299 a 416 c 391 g 278 t
ORIGIN
1 gactcccaga actccggacg tgtgcggcgc agtgagtcgc agccatgttc ctggttaact
61 cgttcttgaa gggcggcggc ggcggcggcg ggggaggcgg gggcctgggt gggggcctgg
121 gaaatgtgct tggaggcctg atcagcgggg ccgggggcgg cggcggcggc ggcggcggcg
181 gcggcggtgg tggaggcggc ggtggcggtg gaacggccat gcgcatccta ggcggagtca
241 tcagcgccat cagcgaggcg gctgcgcagt acaacccgga gcccccgccc ccacgcacac
301 attactccaa cattgaggcc aacgagagtg aggaggtccg gcagttccgg agactctttg
361 cccagctggc tggagatgac atggaggtca gcgccacaga actcatgaac attctcaata
421 aggttgtgac acgacaccct gatctgaaga ctgatggttt tggcattgac acatgtcgca
481 gcatggtggc cgtgatggat agcgacacca caggcaagct gggctttgag gaattcaagt
541 acttgtggaa caacatcaaa aggtggcagg ccatatacaa acagttcgac actgaccgat
601 cagggaccat ttgcagtagt gaactcccag gtgcctttga ggcagcaggg ttccacctga
661 atgagcatct ctataacatg atcatccgac gctactcaga tgaaagtggg aacatggatt
721 ttgacaactt catcagctgc ttggtcaggc tggacgccat gttccgtgcc ttcaaatctc
781 ttgacaaaga tggcactgga caaatccagg tgaacatcca ggagtggctg cagctgacta
841 tgtattcctg aactggagcc ccagacccgc cccctcaccg ccttgctata ggagtcacct
901 ggagcctcgg tctctcccag ggccgatcct gtctgcagtc acatctttgt ggggcctgct
961 gacccacaag cttttgttct ctcagtactt gttacccagc ttctcaacat ccagggccca
1021 atttgccctg cctggagttc cccctggctc taggacactc taacaagctc tgtccacggg
1081 tctccccatt cccaccaggc cctgcacaca cccactccgt aacctctccc ctgtacctgt
1141 gccaagccta gcacttgtga tgcctccatg ccccgagggc cctctctcag ttctgggagg
1201 atgactccag tccctgcacg ccctggcaca cccttcacgg ttgctaccca ggcggccaag
1261 ctccagaccg tgccagaccc aggtgcccca gtgcctttgt ctatattctg ctcccagcct
1321 gccaggccca ggaggaaata aacatgcccc agttgctgat ctctaaaaaa aaaaaaaaaa
1381 aaaa
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