LOCUS BC017274 2501 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens SHQ1 homolog (S. cerevisiae), mRNA (cDNA clone
MGC:29788 IMAGE:4840343), complete cds.
ACCESSION BC017274
VERSION BC017274.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2501)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2501)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC017274.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: g Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..2501
/db_xref="H-InvDB:HIT000050680"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29788 IMAGE:4840343"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2501
/gene="SHQ1"
/gene_synonym="FLJ10539"
/db_xref="GeneID:55164"
/db_xref="HGNC:HGNC:25543"
CDS 86..1819
/gene="SHQ1"
/gene_synonym="FLJ10539"
/codon_start=1
/product="SHQ1 homolog (S. cerevisiae)"
/protein_id="AAH17274.1"
/db_xref="GeneID:55164"
/db_xref="HGNC:HGNC:25543"
/translation="MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGSDFKFYAKP
YFLRLTLPGRIVENGSEQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRT
AKPLVEEIGASEIPEEVVDDEEFDWEIEQTPCEEVSESALNPQCHYGFGNLRSGVLQR
LQDELSDVIDIKDPDFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAIEQILKYNPW
WTDKYSKMMAFLEKSQEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLI
DILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWTNVHDIMVSFGRRVLCYPLY
RHFKLVMKAYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQK
VKSKKLAALAEALKEVSLTKAQLGLELEELEAAALLVQEEETALKAAHSVSGQQTLCS
SSEASDSEDSDSSVSSGNEDSGSDSEQDELKDSPSETVSSLQGPFLEESSAFLIVDGG
VRRNTAIQESDASQGKPLASSWPLGVSGPLIEELGEQLKTTVQVSEPKGTTAVNRSNI
QERDGCQTPNN"
BASE COUNT 738 a 499 c 586 g 678 t
ORIGIN
1 gcgcgtgggg agttggagag tttgcgtggc gggaacgcgg cggcagtgag agcgagcggc
61 gccggccctt gcgtccggtg cggcgatgct gaccccggcg ttcgacctca gccaggatcc
121 ggacttcctg actatcgcca tccgcgtgcc ctacgcccgg gtctccgagt tcgacgtcta
181 cttcgagggg tctgacttca agttctacgc caagccatac tttctcagat taacccttcc
241 tggaagaatt gtagaaaatg gaagtgagca agggtcctat gatgcagata aaggaatttt
301 taccattcgc ctgcccaaag aaacccctgg ccagcatttt gaggggctga acatgttaac
361 tgctcttctg gcaccaagaa aatccaggac agcaaaacca cttgtggaag aaataggtgc
421 ttctgagatt cctgaggaag tagttgacga tgaagagttt gattgggaaa ttgagcagac
481 accctgtgaa gaggtatcag aaagtgcttt gaatccgcag tgccactatg gatttggaaa
541 cttacgatca ggagtgttgc aacggttaca ggatgaactg agtgatgtta ttgatattaa
601 ggatccagat ttcacccctg cagctgaacg aagacagaag cgcctggccg ctgagctggc
661 caagtttgat cctgatcatt atctagctga cttttttgaa gatgaggcga ttgaacagat
721 tttgaagtat aatccttggt ggactgacaa atattcaaaa atgatggcct ttttggaaaa
781 gagtcaggaa caagaaaatc atgctacatt agtgtctttt tctgaagaag agaagtatca
841 gctacgaaaa tttgtcaata aatcttatct gctggacaag agagcctgtc gtcaagtgtg
901 ctacagtttg attgatatcc ttctggcata ttgctatgaa acccgtgtca ctgaaggaga
961 gaagaatgtt gaatctgcat ggaatatcag gaaactgagt ccaacactat gctggtttga
1021 gacttggact aacgttcatg atatcatggt gtcttttgga agaagggtgt tgtgttaccc
1081 actctatcgc catttcaagc tggtgatgaa ggcctacagg gacactataa agatattgca
1141 actgggtaaa agtgcagttt taaagtgtct cctggatatt cacaaaattt ttcaggaaaa
1201 tgacccagcg tacatactga atgatctcta catctcagac tactgtgtgt ggattcagaa
1261 agtcaaatcc aaaaagttgg cagctcttgc agaagcctta aaggaagtct cccttacaaa
1321 ggcccagctg gggttagaac tggaagaact agaagcagca gcactgcttg tccaggagga
1381 agaaactgca ttaaaagcag cccattcagt ttctgggcag cagacacttt gctccagctc
1441 tgaggcaagt gattcggagg actcagacag cagcgtgtca tctggaaacg aagactcagg
1501 ctcagattca gaacaagatg aactcaaaga tagtccatct gagacagtca gttctttgca
1561 aggtcccttt cttgaagaaa gcagtgcctt tcttattgtt gatggtggag tacgcagaaa
1621 cacagccatc caggagtctg atgccagtca gggaaagcca cttgcctctt cctggcctct
1681 tggagtgtct gggcctctga tagaggagct tggggaacaa ctgaagacta cagttcaggt
1741 ttctgaaccc aagggcacca ctgctgtaaa ccgcagcaat attcaggaga gagacggctg
1801 tcagacacca aataattgac tcttaggtgg ttttattcat tgttgagaaa tatggtagat
1861 tgggtttcat ttaccgaatg agaattcttc attttcactt tgtaattttt cttagtatat
1921 agtcagccca ctgtatttgt gtgttccaca tctgtggatt caaccaactg cagatcaaaa
1981 atattgaaga aaaaatcgca tctgtaccaa acatgtacag acttttttct tgttattatt
2041 ctctaaataa tacagtatga caactatttc cacagcattt acattgtatt gggtaatata
2101 agtaatctag tgatgattta aactgtgcag gaggatgtgg gtaggttata tgcaaatact
2161 gcaccatttt ttatcagggg cttgagcatc tgaggatttt agtatcctca ggagtcctgg
2221 aaccaacccc ccacagatac ggggacaact ttatgacatt gtttttcaac caatgaatgt
2281 ttataccttt tgttttcctt gccgcgactg tgaagataaa gttcaaaagt atttttacca
2341 aagtgtagct aatatttcaa gctgaaaata atagttctac tgcccgtgtc tccagaatgt
2401 agagcccatc aatattttta ttttaggagg tgtacttgac acccaataaa ctgcacgtat
2461 caaaagtgta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//