LOCUS BC017259 2963 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens rabphilin 3A homolog (mouse), mRNA (cDNA clone
MGC:29559 IMAGE:3510158), complete cds.
ACCESSION BC017259
VERSION BC017259.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2963)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2963)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC017259.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: a Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45267836.
FEATURES Location/Qualifiers
source 1..2963
/db_xref="H-InvDB:HIT000037908"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29559 IMAGE:3510158"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2963
/gene="RPH3A"
/gene_synonym="KIAA0985"
/gene_synonym="rabphilin"
/db_xref="GeneID:22895"
/db_xref="HGNC:HGNC:17056"
CDS 216..2288
/gene="RPH3A"
/gene_synonym="KIAA0985"
/gene_synonym="rabphilin"
/codon_start=1
/product="rabphilin 3A homolog (mouse)"
/protein_id="AAH17259.1"
/db_xref="GeneID:22895"
/db_xref="HGNC:HGNC:17056"
/translation="MTDTVFSNSSNRWMYPSDRPLQSKLQAGWSVHPGGQPDRQRKQE
ELTDEEKEIINRVIARAEKMEEMEQERIGRLVDRLENMRKNVAGDGVNRCILCGEQLG
MLGSACVVCEDCKKNVCTKCGVETNNRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQ
VLPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRGPGQKTGPDPAS
APGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRPAP
GSVQSPAPPQPGQPGTPGGSRPGPGPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGG
YPAVGAREDRMSHPSGPYSQASAAAPQPAAARQPPPPEEEEEEANSYDSDEATTLGAL
EFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNT
RNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNF
NICLERVIPMKRAGTTGSARGMALYEEEQVERVGDIEERGKILVSLMYSTQQGGLIVG
IIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS
DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ
NENHVSSD"
BASE COUNT 744 a 858 c 798 g 563 t
ORIGIN
1 ggacagtctg agggagccac tgtcccttgt ccactgactc actggctggt ccgagttttc
61 tccgcttctg gcagtggcac ctccgctgag cttttaaacc aagtcattgg gacttagcgt
121 ctttctaccc ggcagggaag ggaggagttg gcaagaattt ggctcaccca ttccccctgc
181 aagcctccag cgtcgcggag cactagacat ctactatgac tgacaccgtg ttcagcaaca
241 gttctaaccg ttggatgtac cccagtgacc ggccccttca atcaaagctc caggcaggct
301 ggtccgtcca ccccggtggt cagcctgaca ggcagaggaa gcaggaagag ctgactgatg
361 aggagaaaga aatcatcaac agggtgattg ctcgagctga gaaaatggaa gagatggagc
421 aggagcgaat cggacgcctg gtggaccgcc tagaaaacat gaggaagaac gtggctggag
481 atggggtgaa ccgctgcata ctgtgtggag aacagctggg gatgctgggc tctgcctgtg
541 tagtatgtga ggactgtaag aagaacgtct gcaccaagtg cggagtggag accaacaacc
601 gcctgcattc tgtgtggctc tgcaaaatct gcattgagca gagggaggtg tggaagcgtt
661 ctggagcgtg gttcttcaaa ggcttcccca aacaggtcct cccacagcct atgcctataa
721 agaagaccaa gccccagcag cctgtcagtg agcctgctgc ccctgaacag cctgctcctg
781 agcccaagca ccctgcccgg gctccagctc gaggtgacag tgaagatagg aggggcccgg
841 gtcagaagac aggccctgac ccagcctctg ctcccgggcg aggaaactat gggcctcccg
901 tgcgcagggc ctccgaggca cgaatgagct catctagccg agattcagag agctgggacc
961 acagtggggg tgctggagac tccagccgga gcccagcagg tttgagacgg gccaactcag
1021 tccaggcctc cagacctgcc ccaggctcgg tgcagagccc agcgccacct cagcctgggc
1081 agccagggac cccaggagga agcagaccgg gtcctgggcc agcaggacgc tttccagatc
1141 agaagccaga ggtggctccg agcgaccctg ggaccactgc cccaccccga gaggagagaa
1201 cagggggagt cgggggctac ccagcagttg gagccagaga ggaccgaatg agccacccct
1261 ccggacccta ttcccaagca tctgcagctg ccccccagcc tgctgcagcc cgccagccac
1321 cacccccaga ggaggaggaa gaggaagcca acagctacga ttcggatgaa gcaaccaccc
1381 tgggtgccct ggaattcagc cttctctacg accaggacaa cagctccctg cagtgcacca
1441 tcattaaggc caagggcctg aagcccatgg attcaaatgg cttggctgat ccctacgtta
1501 agctgcacct cctgccggga gccagcaagt ccaacaagct tcgtacaaaa actctgcgga
1561 atacccggaa ccccatctgg aatgagaccc tcgtgtatca cggcatcacc gatgaggaca
1621 tgcaaaggaa gaccctcagg atctccgtct gtgatgagga caaattcggc cacaatgaat
1681 ttattggtga gaccagattc tccctcaaga aactgaagcc caaccagagg aagaatttca
1741 acatctgcct ggagcgagtg attcctatga aacgtgctgg gaccaccggg tcagcccgag
1801 gcatggccct ttatgaggaa gagcaggtgg agcgtgttgg tgacatcgag gagcgtggca
1861 agatcctggt ctccctcatg tacagcacac agcagggagg cctcattgtg ggcatcatac
1921 gctgcgtgca cctggctgcc atggacgcta atggctactc agacccattc gtcaagctct
1981 ggctgaaacc ggacatggga aagaaggcca aacacaagac tcaaattaaa aagaaaacct
2041 tgaatcccga attcaatgag gagtttttct atgacatcaa acacagtgac ctggcaaaga
2101 agtcactgga catttcagtc tgggactatg acatcggcaa gtccaatgat tacatcggag
2161 gctgccagct ggggatctct gccaagggag agcgcttaaa acactggtac gagtgtctga
2221 aaaataaaga caagaagata gagcgctggc accagctaca gaatgagaac cacgtgtcaa
2281 gtgattaggc tagtgcccag gtccccatct ccatgtcccg ggtccccccc agcctgctct
2341 agctgcccac cgcaccctga tctctcttct ctatgcctac ctccccccat accctgctga
2401 tctccctgag cctgcctttg agcccccgtc acgttgggca ctgctgccaa agactccctc
2461 ctccctgatg ctgggatgtg ggctctgaat acagcccctc tctcatccct gggatggagc
2521 aatggggatg gggttgggga gacgtttaca aagaggttga tcatttaata acctctcagt
2581 ttgggtaaat tacaaaggtt cttcatcatt taggactgtt tttagaccct cctagccttg
2641 aacacacaca tgtacacaca cacacacaca cacacacaca ccctttcatt ccctgtgttg
2701 tgtctctgta tatccccagt tgtcagcaga cccggacaat gctgtgagag aagcattggg
2761 gcacaaatag agcctccggg ctcccactgc cccctgagat gtacaccctg attgccagga
2821 aaacagactg ctgtgttcag taacacaccc tccctgctcc aagtgcacca ggatgcaaat
2881 gcacagaatt caccaggggc ttggacgctc tcctctttcc gaatgtcacc tgtgtgcttc
2941 ctagcaaaaa aaaaaaaaaa aaa
//