LOCUS BC017230 864 bp mRNA linear HUM 25-AUG-2005
DEFINITION Homo sapiens SHANK-associated RH domain interactor, mRNA (cDNA
clone IMAGE:4121648), partial cds.
ACCESSION BC017230
VERSION BC017230.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 864)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 864)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC017230.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: d Column: 13.
FEATURES Location/Qualifiers
source 1..864
/db_xref="H-InvDB:HIT000089215"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4121648"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..864
/gene="SHARPIN"
/gene_synonym="DKFZP434N1923"
/gene_synonym="SIPL1"
/db_xref="GeneID:81858"
CDS <1..567
/gene="SHARPIN"
/gene_synonym="DKFZP434N1923"
/gene_synonym="SIPL1"
/codon_start=1
/product="SHARPIN protein"
/protein_id="AAH17230.1"
/db_xref="GeneID:81858"
/translation="ACPVSLPSPPEASTLKGPPPEADLPRSPGNLTEREELAGSLARA
IAGGDEKGAAQVAAVLAQHRVALSVQLQEACFPPGPIRLQVTLEDAASAASAASSAHV
ALQVHPHCTVAALQEQVFSELGFPPAVQRWVIGRCLCVPERSLASYGVRQDGDPAFLY
LLSAPREAPAQLVLSFLHLHQCPRPPWL"
BASE COUNT 217 a 272 c 224 g 151 t
ORIGIN
1 gcatgccctg tctccctgcc cagtcccccg gaagcctcca cactcaaggg ccctccacct
61 gaggcagatc ttcctaggag ccctggaaac ttgacggaga gagaagagct ggcagggagc
121 ctggcccggg ctattgcagg tggagacgag aagggggcag cccaagtggc agccgtcctg
181 gcccagcatc gtgtggccct gagtgttcag cttcaggagg cctgcttccc acctggcccc
241 atcaggctgc aggtcacact tgaagacgct gcctctgccg catccgccgc gtcctctgca
301 cacgttgccc tgcaggtcca cccccactgc actgttgcag ctctccagga gcaggtgttc
361 tcagagctcg gtttcccgcc agccgtgcaa cgctgggtca tcggacggtg cctgtgtgtg
421 cctgagcgca gccttgcctc ttacggggtt cggcaggatg gggaccctgc tttcctctac
481 ttgctgtcag ctcctcgaga agccccagcc cagctggtcc tgtccttcct gcaccttcat
541 caatgcccca gaccgccctg gctgtgagat gtgtagcacc cagaggccct gcacttggga
601 cccccttgct gcagcttcca cctagcagcc accagaggtt acaaggggag agtggccctt
661 ccctcacaag tccgacatct ccaggccccc actgaactcc ggggacctct actgactgct
721 tgctgggaca gtcaccaggg ttggggggaa gggccacaaa atgaaaccat taaagaccct
781 taagagccag caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
841 aaaaaaaaaa aaaaaaaaaa aaaa
//