LOCUS BC017212 1378 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens PHD finger protein 11, mRNA (cDNA clone MGC:10254
IMAGE:4054134), complete cds.
ACCESSION BC017212
VERSION BC017212.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1378)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1378)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC017212.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: f Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705832.
FEATURES Location/Qualifiers
source 1..1378
/db_xref="H-InvDB:HIT000037880"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10254 IMAGE:4054134"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1378
/gene="PHF11"
/gene_synonym="APY"
/gene_synonym="BCAP"
/gene_synonym="IGEL"
/gene_synonym="IGER"
/gene_synonym="IGHER"
/gene_synonym="NY-REN-34"
/gene_synonym="NYREN34"
/gene_synonym="RP11-185C18.3"
/db_xref="GeneID:51131"
/db_xref="HGNC:HGNC:17024"
/db_xref="MIM:607796"
CDS 139..1017
/gene="PHF11"
/gene_synonym="APY"
/gene_synonym="BCAP"
/gene_synonym="IGEL"
/gene_synonym="IGER"
/gene_synonym="IGHER"
/gene_synonym="NY-REN-34"
/gene_synonym="NYREN34"
/gene_synonym="RP11-185C18.3"
/codon_start=1
/product="PHD finger protein 11"
/protein_id="AAH17212.2"
/db_xref="GeneID:51131"
/db_xref="HGNC:HGNC:17024"
/db_xref="MIM:607796"
/translation="MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECED
QDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDA
VPQSDGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNT
FIRQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESD
YEEIGSALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQE
NRDLMSSSTSISSLSY"
BASE COUNT 467 a 282 c 279 g 350 t
ORIGIN
1 acccgcagct gcagcacagt catggcccag gcgtcgccgc cccggcccga gagggtgctc
61 ggcgccagca gcccggaggc ccggcccgcg caggaggcgc tcctccttcc caccggtgtc
121 tttcaggttg cagaaaagat ggaaaaaagg acatgtgcac tctgccccaa agatgtcgaa
181 tataatgtcc tgtactttgc acaatcagag aatatagctg ctcatgagaa ttgtttgctg
241 tattcttcag gacttgtgga atgtgaggat caggatccac ttaatcctga tagaagtttt
301 gatgtggaat cagtaaagaa agaaatccag agaggaagga agttgaaatg caaattttgt
361 cataaaagag gagccaccgt gggatgtgat ttaaaaaact gtaacaagaa ttaccacttt
421 ttctgtgcca agaaggacga cgcagttcca cagtctgatg gagttcgagg aatttataaa
481 ctgctttgcc agcaacatgc tcaattcccg atcatcgctc aaagtgctaa attttcagga
541 gtgaaaagaa aaagaggaag gaagaaaccc ctctcaggca atcatgtaca gccacccgaa
601 acaatgaaat gtaatacatt cataagacaa gtgaaagaag agcatggcag acacacagat
661 gcaactgtga aagttccttt tcttaagaaa tgcaaggaag caggacttct taattactta
721 cttgaagaaa tattagacaa agttcattca attccagaaa aactcatgga tgagactact
781 tcagaatcag actatgaaga aatcgggagt gcactttttg actgtagatt gttcgaagac
841 acatttgtaa attttcaagc agcaatagag aaaaaaattc atgcatctca acaaaggtgg
901 cagcagttga aggaagagat tgagctactt caggacttaa aacaaacctt gtgctctttt
961 caagaaaata gagatcttat gtcaagttct acatcaatat catccctgtc ttattaggga
1021 ttaccgtttc ctaagccaag agtcatgtca aattgcaatc aggctcaaaa ccagagacca
1081 ggctgtgaaa tccacacatc tttagaacta gtcgtctcct cttggcctca gcagctcttc
1141 cctgttctta ctggttgaca ttttgatcac tctttgcaca ctcttgtgtt ttttgctcac
1201 tgtcacattc ccagcaccta gtatgctcag taaatgtttg tggaataagt gcataaaatg
1261 ttcttaacct ttgattctac ttacagccca tgatagcctc ttcttagata taataaattt
1321 ggattatact aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//