LOCUS BC017105 2321 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA
clone IMAGE:3533805), partial cds.
ACCESSION BC017105
VERSION BC017105.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2321)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2321)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: i Column: 10.
FEATURES Location/Qualifiers
source 1..2321
/db_xref="H-InvDB:HIT000089190"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3533805"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2321
/gene="SUPT6H"
/gene_synonym="emb-5"
/gene_synonym="KIAA0162"
/gene_synonym="SPT6"
/gene_synonym="SPT6H"
/db_xref="GeneID:6830"
/db_xref="MIM:601333"
CDS <1..2203
/gene="SUPT6H"
/gene_synonym="emb-5"
/gene_synonym="KIAA0162"
/gene_synonym="SPT6"
/gene_synonym="SPT6H"
/codon_start=2
/product="SUPT6H protein"
/protein_id="AAH17105.1"
/db_xref="GeneID:6830"
/db_xref="MIM:601333"
/translation="NSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDIL
CLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRK
GTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLD
GSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELE
RQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICN
VTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGV
KTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDL
MDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAE
KMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINS
EEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPY
FICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDP
VPGITPSSSSRTRTPASINATPANINPADLTRAVNALPQNMTSQMFSAIAAVTGQGQN
PNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPSYSYTTPI"
misc_feature 2..781
/gene="SUPT6H"
/gene_synonym="emb-5"
/gene_synonym="KIAA0162"
/gene_synonym="SPT6"
/gene_synonym="SPT6H"
/note="CSZ; Region: domain in chromatin remodeling S1
domain containing proteins and zinc fingers"
/db_xref="CDD:smart00578"
BASE COUNT 703 a 606 c 581 g 431 t
ORIGIN
1 gaacagcaag aagtcagagg cagagttccg ggattatcct ccagtgctga gacaggccgt
61 ctccctggcc cggcgcatcc aggaccctct gattgaattt gcccaggtgt gcagttccga
121 tgaagacatc ctgtgtctca agtttcaccc cttgcaggag catgtggtga aagaggagct
181 gctcaacgcc ttgtactgtg aatttatcaa ccgagtcaat gaggtcgggg tcgatgtcaa
241 ccgtgccatt gcccaccctt acagccaggc cttgatccag tatgtttgtg gcctgggacc
301 tcggaaaggg acccacctcc tgaagatcct gaagcagaac aacacccggc tcgagagccg
361 gacccagctg gtcaccatgt gccacatggg tcccaaagtc ttcatgaatt gtgctggctt
421 cctcaagatc gacacggcct ccctggggga cagcactgac tcatatattg aagtccttga
481 tggttcccgt gtccaccctg agacttatga gtgggctagg aagatggcag tggatgccct
541 ggaatacgat gaatcagccg aggatgccaa tcctgcagga gcccttgaag aaatcttgga
601 aaacccagag cgactgaaag acctggacct tgatgccttt gcagaagagc tggagaggca
661 gggctatggt gacaaacaca tcacactcta tgacatccgg gcagagctga gctgtcgata
721 taaggacctc cggacagcct accgctctcc caacacagag gagatcttca atatgttaac
781 caaagaaaca ccagagacct tctacattgg aaagctcatc atctgcaatg tcactggcat
841 tgcccacagg cgtccccagg gtgagagcta tgaccaggcg atccgcaatg atgagacagg
901 gctgtggcag tgccccttct gtcagcagga caatttccct gaactaagcg aggtgtggaa
961 ccactttgac agcggttcgt gcccaggcca ggccatcggt gtcaaaacac ggctagacaa
1021 tggtgtcacc ggcttcatcc ccaccaaatt cctcagtgac aaagtggtaa agcggccaga
1081 agaacgagtg aaggtgggaa tgactgttca ctgccgcatc atgaagattg acattgagaa
1141 gttcagtgca gacctgacct gccgcacctc agacctcatg gacaggaaca atgagtggaa
1201 gctgcccaaa gacacctact atgactttga tgctgaagct gcagaccaca agcaggagga
1261 ggacatgaag cggaagcagc agcggaccac atacatcaag agagtgatcg cacacccatc
1321 cttccataat atcaatttca agcaagcaga aaagatgatg gagaccatgg accagggtga
1381 tgtgattatc cgaccaagca gcaagggcga gaaccacctg acagtgacct ggaaagtcag
1441 tgatggcatc taccagcatg tggatgtgcg ggaggagggc aaggaaaatg ccttcagcct
1501 gggagccact ctgtggatca acagtgagga attcgaagat ttggatgaga ttgttgctcg
1561 ctatgtccag cccatggcat cctttgcccg ggaccttctg aatcacaagt attatcagga
1621 ctgcagcggt ggggaccgca agaaattaga ggagctgctc atcaaaacta agaaggagaa
1681 gcccaccttc atcccttatt tcatctgtgc ctgcaaggaa ctgcccggca agttcctact
1741 gggataccag ccccggggta aacccaggat agaatatgta acggtgactc cagagggatt
1801 ccggtaccgg ggccagatct tcccaaccgt gaatggactg tttagatggt ttaaggatca
1861 ctaccaggat cctgtaccag gcatcacccc tagcagcagc agcaggaccc ggacacctgc
1921 ctctatcaat gctaccccag ccaacatcaa ccctgcagat ctgacacggg ctgtgaatgc
1981 cctgcctcag aacatgactt cacagatgtt cagtgccatt gctgcggtga caggccaagg
2041 acagaaccct aatgccaccc cagcccagtg ggcctccagc cagtacggct atggcggcag
2101 tggaggcggc agcagtgctt accacgtatt cccaacgcca gcccagcagc cagtggccac
2161 accactaatg acccctagct actcctacac gacccctatc tgagaaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//